Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6YNL

Crystal structure of YTHDC1 with compound DHU_DC1_078

Functional Information from GO Data
ChainGOidnamespacecontents
A0003723molecular_functionRNA binding
B0003723molecular_functionRNA binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue SO4 A 601
ChainResidue
AGLY344
ATHR345
ASER346
ALYS347
AHOH715
AHOH725

site_idAC2
Number of Residues7
Detailsbinding site for residue SO4 A 602
ChainResidue
AHOH702
AHOH777
BGLY344
BLYS347
ATRP465
AGLN478
AGLU479

site_idAC3
Number of Residues2
Detailsbinding site for residue SO4 A 603
ChainResidue
AHIS420
AHIS421

site_idAC4
Number of Residues4
Detailsbinding site for residue SO4 A 604
ChainResidue
AASN367
ATRP377
ASER378
ATRP428

site_idAC5
Number of Residues4
Detailsbinding site for residue SO4 A 605
ChainResidue
APHE391
ASER417
AGLU418
AHIS420

site_idAC6
Number of Residues7
Detailsbinding site for residue P0Z B 601
ChainResidue
BSER378
BLEU380
BTRP428
BPRO431
BMET434
BSO4605
BHOH719

site_idAC7
Number of Residues7
Detailsbinding site for residue SO4 B 602
ChainResidue
BARG451
BGLU452
BHOH729
BHOH736
BHOH738
BHOH764
BHOH808

site_idAC8
Number of Residues6
Detailsbinding site for residue SO4 B 603
ChainResidue
BSER419
BHIS420
BHIS421
BARG451
BHOH757
BHOH795

site_idAC9
Number of Residues4
Detailsbinding site for residue SO4 B 604
ChainResidue
BARG475
BASP476
BHOH743
BHOH816

site_idAD1
Number of Residues6
Detailsbinding site for residue SO4 B 605
ChainResidue
BSER362
BASN363
BASN364
BASN367
BPRO431
BP0Z601

site_idAD2
Number of Residues9
Detailsbinding site for residue SO4 B 606
ChainResidue
BLYS385
BASN388
BARG392
BLYS457
BHOH703
BHOH709
BHOH712
BHOH715
BHOH779

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:31670957, ECO:0007744|PDB:6RT4, ECO:0007744|PDB:6RT5, ECO:0007744|PDB:6RT6, ECO:0007744|PDB:6RT7
ChainResidueDetails
BLYS361
BASP476
ALYS361
AASP476

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:25242552, ECO:0000269|PubMed:31670957, ECO:0007744|PDB:6RT4, ECO:0007744|PDB:6RT5, ECO:0007744|PDB:6RT6, ECO:0007744|PDB:6RT7
ChainResidueDetails
ATRP377
BTRP377

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:25242552
ChainResidueDetails
ATRP428
BTRP428

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:23186163
ChainResidueDetails
ASER424
BSER424

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:20068231
ChainResidueDetails
ASER435
BSER435

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon