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6YNK

Crystal structure of YTHDC1 with compound DHU_DC1_068

Functional Information from GO Data
ChainGOidnamespacecontents
A0003723molecular_functionRNA binding
B0003723molecular_functionRNA binding
Functional Information from PDB Data
site_idAC1
Number of Residues14
Detailsbinding site for residue P0K A 601
ChainResidue
ALYS361
ALEU439
AASP476
AHOH726
AHOH757
AHOH834
AASN363
AASN367
ATRP377
ASER378
ATHR379
AARG404
ATRP428
AMET434

site_idAC2
Number of Residues6
Detailsbinding site for residue SO4 A 602
ChainResidue
AARG404
AARG475
AASP476
AHOH702
AHOH703
AHOH724

site_idAC3
Number of Residues10
Detailsbinding site for residue SO4 A 603
ChainResidue
ALYS386
ATRP465
AGLN478
AGLU479
AHOH731
AHOH821
AHOH837
BLYS347
BPEG602
BHOH704

site_idAC4
Number of Residues8
Detailsbinding site for residue SO4 A 604
ChainResidue
AGLY344
ATHR345
ASER346
ALYS347
AHOH705
AHOH792
AHOH793
AHOH859

site_idAC5
Number of Residues14
Detailsbinding site for residue P0K B 601
ChainResidue
BLYS361
BASN363
BASN367
BTRP377
BSER378
BTHR379
BARG404
BTRP428
BLEU430
BMET434
BLEU439
BASP476
BHOH772
BHOH794

site_idAC6
Number of Residues13
Detailsbinding site for residue PEG B 602
ChainResidue
AARG356
AGLU479
ASO4603
BLYS347
BASP499
BLEU500
BTYR501
BHOH704
BHOH727
BHOH777
BHOH848
BHOH874
BHOH944

site_idAC7
Number of Residues7
Detailsbinding site for residue SO4 B 603
ChainResidue
BARG404
BARG475
BASP476
BHOH705
BHOH767
BHOH797
BHOH902

site_idAC8
Number of Residues7
Detailsbinding site for residue SO4 B 604
ChainResidue
BARG451
BGLU452
BHOH733
BHOH754
BHOH758
BHOH780
BHOH844

site_idAC9
Number of Residues5
Detailsbinding site for residue SO4 B 605
ChainResidue
BSER419
BHIS420
BHIS421
BARG451
BHOH869

site_idAD1
Number of Residues6
Detailsbinding site for residue SO4 B 606
ChainResidue
BLYS385
BASN388
BARG392
BHOH702
BHOH703
BHOH706

site_idAD2
Number of Residues7
Detailsbinding site for residue SO4 B 607
ChainResidue
AHOH730
BASN364
BHIS365
BGLU366
BHOH707
BHOH713
BHOH804

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:31670957, ECO:0007744|PDB:6RT4, ECO:0007744|PDB:6RT5, ECO:0007744|PDB:6RT6, ECO:0007744|PDB:6RT7
ChainResidueDetails
ALYS361
AASP476
BLYS361
BASP476

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:25242552, ECO:0000269|PubMed:31670957, ECO:0007744|PDB:6RT4, ECO:0007744|PDB:6RT5, ECO:0007744|PDB:6RT6, ECO:0007744|PDB:6RT7
ChainResidueDetails
ATRP377
BTRP377

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:25242552
ChainResidueDetails
ATRP428
BTRP428

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:23186163
ChainResidueDetails
ASER424
BSER424

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:20068231
ChainResidueDetails
ASER435
BSER435

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PDB entries from 2024-09-25

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