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6YNI

Crystal structure of YTHDC1 with compound DHU_DC1_036

Functional Information from GO Data
ChainGOidnamespacecontents
A0003723molecular_functionRNA binding
B0003723molecular_functionRNA binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue SO4 A 601
ChainResidue
AGLY344
ASER346
ALYS347
AHOH704

site_idAC2
Number of Residues7
Detailsbinding site for residue SO4 A 602
ChainResidue
BGLY344
BLYS347
ATRP465
AGLN478
AGLU479
AHOH702
AHOH703

site_idAC3
Number of Residues5
Detailsbinding site for residue SO4 A 603
ChainResidue
APHE391
ASER417
AGLU418
AHIS420
AHOH722

site_idAC4
Number of Residues3
Detailsbinding site for residue SO4 A 604
ChainResidue
ASER419
AHIS420
AHIS421

site_idAC5
Number of Residues7
Detailsbinding site for residue SO4 B 601
ChainResidue
BSER362
BASN363
BASN367
BP0Q607
BHOH721
BHOH755
BHOH773

site_idAC6
Number of Residues7
Detailsbinding site for residue SO4 B 602
ChainResidue
BARG451
BGLU452
BHOH713
BHOH731
BHOH732
BHOH742
BHOH791

site_idAC7
Number of Residues6
Detailsbinding site for residue SO4 B 603
ChainResidue
BSER419
BHIS420
BHIS421
BARG451
BPRO493
BHOH730

site_idAC8
Number of Residues4
Detailsbinding site for residue SO4 B 604
ChainResidue
BARG404
BARG475
BASP476
BHOH734

site_idAC9
Number of Residues7
Detailsbinding site for residue SO4 B 605
ChainResidue
BLYS361
BARG404
BGLU405
BHOH706
BHOH810
BHOH849
BHOH860

site_idAD1
Number of Residues7
Detailsbinding site for residue SO4 B 606
ChainResidue
BPHE391
BSER417
BGLU418
BHIS420
BHOH709
BHOH724
BHOH793

site_idAD2
Number of Residues11
Detailsbinding site for residue P0Q B 607
ChainResidue
BASN367
BTRP377
BSER378
BLEU380
BTRP428
BPRO431
BSER435
BMET438
BLEU439
BSO4601
BHOH771

site_idAD3
Number of Residues5
Detailsbinding site for residue P0Q B 608
ChainResidue
ATRP465
AGLU481
BTYR350
BHIS427
BTRP428

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:31670957, ECO:0007744|PDB:6RT4, ECO:0007744|PDB:6RT5, ECO:0007744|PDB:6RT6, ECO:0007744|PDB:6RT7
ChainResidueDetails
ALYS361
AASP476
BLYS361
BASP476

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:25242552, ECO:0000269|PubMed:31670957, ECO:0007744|PDB:6RT4, ECO:0007744|PDB:6RT5, ECO:0007744|PDB:6RT6, ECO:0007744|PDB:6RT7
ChainResidueDetails
ATRP377
BTRP377

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:25242552
ChainResidueDetails
ATRP428
BTRP428

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:23186163
ChainResidueDetails
ASER424
BSER424

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:20068231
ChainResidueDetails
ASER435
BSER435

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PDB entries from 2024-07-10

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