6YMY
Cytochrome c oxidase from Saccharomyces cerevisiae
Functional Information from GO Data
Chain | GOid | namespace | contents |
a | 0004129 | molecular_function | cytochrome-c oxidase activity |
a | 0005515 | molecular_function | protein binding |
a | 0005739 | cellular_component | mitochondrion |
a | 0005743 | cellular_component | mitochondrial inner membrane |
a | 0005751 | cellular_component | mitochondrial respiratory chain complex IV |
a | 0006119 | biological_process | oxidative phosphorylation |
a | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
a | 0009060 | biological_process | aerobic respiration |
a | 0015990 | biological_process | electron transport coupled proton transport |
a | 0016020 | cellular_component | membrane |
a | 0020037 | molecular_function | heme binding |
a | 0031966 | cellular_component | mitochondrial membrane |
a | 0045277 | cellular_component | respiratory chain complex IV |
a | 0045333 | biological_process | cellular respiration |
a | 0046872 | molecular_function | metal ion binding |
a | 0070469 | cellular_component | respirasome |
b | 0004129 | molecular_function | cytochrome-c oxidase activity |
b | 0005507 | molecular_function | copper ion binding |
b | 0005515 | molecular_function | protein binding |
b | 0005739 | cellular_component | mitochondrion |
b | 0005743 | cellular_component | mitochondrial inner membrane |
b | 0005751 | cellular_component | mitochondrial respiratory chain complex IV |
b | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
b | 0009060 | biological_process | aerobic respiration |
b | 0016020 | cellular_component | membrane |
b | 0016491 | molecular_function | oxidoreductase activity |
b | 0022900 | biological_process | electron transport chain |
b | 0042773 | biological_process | ATP synthesis coupled electron transport |
b | 0046872 | molecular_function | metal ion binding |
b | 0070469 | cellular_component | respirasome |
b | 1902600 | biological_process | proton transmembrane transport |
c | 0004129 | molecular_function | cytochrome-c oxidase activity |
c | 0005739 | cellular_component | mitochondrion |
c | 0005743 | cellular_component | mitochondrial inner membrane |
c | 0005751 | cellular_component | mitochondrial respiratory chain complex IV |
c | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
c | 0009055 | molecular_function | electron transfer activity |
c | 0009060 | biological_process | aerobic respiration |
c | 0016020 | cellular_component | membrane |
c | 0019646 | biological_process | aerobic electron transport chain |
c | 0022904 | biological_process | respiratory electron transport chain |
c | 0031966 | cellular_component | mitochondrial membrane |
c | 0045333 | biological_process | cellular respiration |
c | 1902600 | biological_process | proton transmembrane transport |
d | 0005740 | cellular_component | mitochondrial envelope |
d | 0005751 | cellular_component | mitochondrial respiratory chain complex IV |
d | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
e | 0005751 | cellular_component | mitochondrial respiratory chain complex IV |
e | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
f | 0005743 | cellular_component | mitochondrial inner membrane |
f | 0005751 | cellular_component | mitochondrial respiratory chain complex IV |
f | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
g | 0004129 | molecular_function | cytochrome-c oxidase activity |
g | 0005739 | cellular_component | mitochondrion |
g | 0005743 | cellular_component | mitochondrial inner membrane |
g | 0005751 | cellular_component | mitochondrial respiratory chain complex IV |
g | 0006119 | biological_process | oxidative phosphorylation |
g | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
g | 0016491 | molecular_function | oxidoreductase activity |
g | 0031966 | cellular_component | mitochondrial membrane |
g | 0045333 | biological_process | cellular respiration |
g | 1902600 | biological_process | proton transmembrane transport |
h | 0005751 | cellular_component | mitochondrial respiratory chain complex IV |
h | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
i | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
j | 0004129 | molecular_function | cytochrome-c oxidase activity |
j | 0005739 | cellular_component | mitochondrion |
j | 0005743 | cellular_component | mitochondrial inner membrane |
j | 0005751 | cellular_component | mitochondrial respiratory chain complex IV |
j | 0005758 | cellular_component | mitochondrial intermembrane space |
j | 0006119 | biological_process | oxidative phosphorylation |
j | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
j | 0016491 | molecular_function | oxidoreductase activity |
j | 0031966 | cellular_component | mitochondrial membrane |
j | 0033617 | biological_process | mitochondrial cytochrome c oxidase assembly |
j | 0045277 | cellular_component | respiratory chain complex IV |
j | 0045333 | biological_process | cellular respiration |
j | 1902600 | biological_process | proton transmembrane transport |
k | 0005743 | cellular_component | mitochondrial inner membrane |
k | 0005751 | cellular_component | mitochondrial respiratory chain complex IV |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 3 |
Details | binding site for residue CU a 601 |
Chain | Residue |
a | HIS241 |
a | HIS290 |
a | HIS291 |
site_id | AC2 |
Number of Residues | 23 |
Details | binding site for residue HEA a 602 |
Chain | Residue |
a | ALA63 |
a | MET66 |
a | ILE67 |
a | TRP127 |
a | TYR371 |
a | VAL374 |
a | PHE377 |
a | HIS378 |
a | LEU381 |
a | SER382 |
a | LEU389 |
a | PHE390 |
a | PHE425 |
a | MET428 |
a | ARG438 |
a | ARG439 |
a | ALA461 |
a | PHE19 |
a | SER33 |
a | ILE36 |
a | ARG37 |
a | VAL59 |
a | HIS62 |
site_id | AC3 |
Number of Residues | 20 |
Details | binding site for residue HEA a 603 |
Chain | Residue |
a | TRP237 |
a | VAL244 |
a | TYR245 |
a | HIS290 |
a | HIS291 |
a | ILE312 |
a | THR316 |
a | GLY317 |
a | GLY352 |
a | GLY355 |
a | LEU358 |
a | ALA359 |
a | ASP364 |
a | HIS368 |
a | VAL373 |
a | HIS376 |
a | PHE377 |
a | VAL380 |
a | LEU381 |
a | ARG438 |
site_id | AC4 |
Number of Residues | 4 |
Details | binding site for residue PTY a 604 |
Chain | Residue |
a | HIS328 |
a | LEU339 |
b | MET57 |
e | ILE95 |
site_id | AC5 |
Number of Residues | 10 |
Details | binding site for residue PTY a 605 |
Chain | Residue |
a | PHE95 |
a | PRO96 |
a | ARG97 |
a | ILE98 |
c | HIS15 |
c | SER62 |
c | TRP65 |
c | GLU72 |
c | HIS79 |
c | PHE94 |
site_id | AC6 |
Number of Residues | 8 |
Details | binding site for residue CN3 a 606 |
Chain | Residue |
a | ASN406 |
a | LYS408 |
a | PHE466 |
a | TYR470 |
a | LYS487 |
e | PHE94 |
e | LYS97 |
h | PHE54 |
site_id | AC7 |
Number of Residues | 6 |
Details | binding site for residue CUA b 301 |
Chain | Residue |
b | HIS186 |
b | CYS221 |
b | GLU223 |
b | CYS225 |
b | HIS229 |
b | MET232 |
site_id | AC8 |
Number of Residues | 4 |
Details | binding site for residue PTY b 302 |
Chain | Residue |
a | PHE268 |
b | GLY78 |
b | THR80 |
i | LYS11 |
site_id | AC9 |
Number of Residues | 15 |
Details | binding site for residue PTY b 303 |
Chain | Residue |
a | THR354 |
a | PHE426 |
a | PHE430 |
b | THR19 |
b | PRO20 |
b | TYR21 |
b | ALA22 |
b | CYS23 |
i | TRP32 |
i | PHE36 |
i | PTY101 |
m | LEU51 |
m | PRO54 |
m | GLY55 |
m | TYR58 |
site_id | AD1 |
Number of Residues | 10 |
Details | binding site for residue PTY c 301 |
Chain | Residue |
c | LEU235 |
c | HIS239 |
c | VAL241 |
c | GLY242 |
c | PHE66 |
c | ILE69 |
c | ALA73 |
c | THR74 |
c | ARG229 |
c | HIS234 |
site_id | AD2 |
Number of Residues | 16 |
Details | binding site for residue PCF c 302 |
Chain | Residue |
a | SER204 |
a | THR208 |
a | PHE216 |
c | TYR189 |
c | ALA192 |
c | ALA193 |
c | PHE194 |
c | ILE196 |
c | TYR206 |
c | GLY210 |
k | TRP108 |
k | THR114 |
k | LEU115 |
k | PHE116 |
k | TRP117 |
k | ASN122 |
site_id | AD3 |
Number of Residues | 4 |
Details | binding site for residue ZN d 201 |
Chain | Residue |
d | CYS111 |
d | HIS119 |
d | CYS134 |
d | CYS137 |
site_id | AD4 |
Number of Residues | 2 |
Details | binding site for residue PTY e 201 |
Chain | Residue |
e | PCF202 |
m | PCF101 |
site_id | AD5 |
Number of Residues | 6 |
Details | binding site for residue PCF e 202 |
Chain | Residue |
a | TYR452 |
e | ALA111 |
e | ARG114 |
e | GLY118 |
e | PTY201 |
m | PCF101 |
site_id | AD6 |
Number of Residues | 3 |
Details | binding site for residue PTY i 101 |
Chain | Residue |
b | PTY303 |
i | TYR31 |
i | PHE36 |
site_id | AD7 |
Number of Residues | 7 |
Details | binding site for residue PCF m 101 |
Chain | Residue |
a | ILE456 |
b | TYR21 |
e | PTY201 |
e | PCF202 |
m | VAL57 |
m | SER61 |
m | ALA63 |
Functional Information from PROSITE/UniProt
site_id | PS00077 |
Number of Residues | 55 |
Details | COX1_CUB Heme-copper oxidase catalytic subunit, copper B binding region signature. WFFGHPeVyiliipgfgiishvvstyskkpvfgeismvyamasigllgflvws..HH |
Chain | Residue | Details |
a | TRP237-HIS291 |
site_id | PS00078 |
Number of Residues | 49 |
Details | COX2 CO II and nitrous oxide reductase dinuclear copper centers signature. ViHdfaipslgikvdatpgrlnqvsaliqregvfyga......CselCgtgHanM |
Chain | Residue | Details |
b | VAL184-MET232 |
site_id | PS00848 |
Number of Residues | 23 |
Details | COX5B_1 Cytochrome c oxidase subunit Vb, zinc binding region signature. IMWlkptvnevarCweCGsvYKL |
Chain | Residue | Details |
d | ILE121-LEU143 |
site_id | PS01329 |
Number of Residues | 18 |
Details | COX6A Cytochrome c oxidase subunit VIa signature. IRsKpFfWGDGdKTlFwN |
Chain | Residue | Details |
k | ILE101-ASN118 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 27 |
Details | TRANSMEM: Helical => ECO:0000269|PubMed:30598554 |
Chain | Residue | Details |
k | ALA44-TYR71 | |
d | HIS119 | |
d | CYS134 | |
d | CYS137 |
site_id | SWS_FT_FI2 |
Number of Residues | 57 |
Details | TOPO_DOM: Mitochondrial intermembrane => ECO:0000269|PubMed:30598554 |
Chain | Residue | Details |
k | PHE72-ASP129 | |
c | SER115-LEU137 | |
c | TYR189-TYR201 | |
c | TRP266-VAL269 | |
a | ALA359-THR370 | |
a | GLY432-GLY449 |
site_id | SWS_FT_FI3 |
Number of Residues | 1 |
Details | TOPO_DOM: Mitochondrial intermembrane => ECO:0000269|PubMed:30598554 |
Chain | Residue | Details |
h | LYS74 |
site_id | SWS_FT_FI4 |
Number of Residues | 25 |
Details | TOPO_DOM: Mitochondrial matrix => ECO:0000269|PubMed:30598554 |
Chain | Residue | Details |
c | THR74-THR80 | |
c | GLY162-ARG164 | |
c | ARG231-ILE248 | |
a | HIS328-ALA335 | |
a | LEU401-ASN406 | |
a | GLN475-SER534 |
site_id | SWS_FT_FI5 |
Number of Residues | 33 |
Details | TRANSMEM: Helical; Name=3 => ECO:0000269|PubMed:30598554 |
Chain | Residue | Details |
c | MET81-MET114 | |
b | CYS221 | |
b | CYS225 | |
b | MET232 |
site_id | SWS_FT_FI6 |
Number of Residues | 23 |
Details | TRANSMEM: Helical; Name=4 => ECO:0000269|PubMed:30598554 |
Chain | Residue | Details |
c | PRO138-ALA161 | |
b | HIS229 |
site_id | SWS_FT_FI7 |
Number of Residues | 23 |
Details | TRANSMEM: Helical; Name=5 => ECO:0000269|PubMed:30598554 |
Chain | Residue | Details |
c | ASN165-GLU188 |
site_id | SWS_FT_FI8 |
Number of Residues | 28 |
Details | TRANSMEM: Helical; Name=6 => ECO:0000269|PubMed:30598554 |
Chain | Residue | Details |
c | GLY202-MET230 |
site_id | SWS_FT_FI9 |
Number of Residues | 16 |
Details | TRANSMEM: Helical; Name=7 => ECO:0000269|PubMed:30598554 |
Chain | Residue | Details |
c | TYR249-TYR265 |
site_id | SWS_FT_FI10 |
Number of Residues | 28 |
Details | TRANSMEM: Helical; Name=8 => ECO:0000269|PubMed:30598554 |
Chain | Residue | Details |
a | ALA299-ILE327 |
site_id | SWS_FT_FI11 |
Number of Residues | 22 |
Details | TRANSMEM: Helical; Name=9 => ECO:0000269|PubMed:30598554 |
Chain | Residue | Details |
a | THR336-LEU358 |
site_id | SWS_FT_FI12 |
Number of Residues | 29 |
Details | TRANSMEM: Helical; Name=10 => ECO:0000269|PubMed:30598554 |
Chain | Residue | Details |
a | TYR371-ILE400 |
site_id | SWS_FT_FI13 |
Number of Residues | 24 |
Details | TRANSMEM: Helical; Name=11 => ECO:0000269|PubMed:30598554 |
Chain | Residue | Details |
a | GLU407-LEU431 |
site_id | SWS_FT_FI14 |
Number of Residues | 24 |
Details | TRANSMEM: Helical; Name=12 => ECO:0000269|PubMed:30598554 |
Chain | Residue | Details |
a | TRP450-ASP474 |
site_id | SWS_FT_FI15 |
Number of Residues | 9 |
Details | BINDING: BINDING => ECO:0000269|PubMed:30598554, ECO:0000269|PubMed:30598556 |
Chain | Residue | Details |
a | GLU39 | |
a | ALA42 | |
a | GLY44 | |
a | HIS241 | |
a | HIS290 | |
a | HIS291 | |
a | HIS368 | |
a | ASP369 | |
a | PRO441 |
site_id | SWS_FT_FI16 |
Number of Residues | 2 |
Details | BINDING: axial binding residue => ECO:0000269|PubMed:30598554, ECO:0000269|PubMed:30598556 |
Chain | Residue | Details |
a | HIS62 | |
a | HIS378 |
site_id | SWS_FT_FI17 |
Number of Residues | 1 |
Details | BINDING: BINDING => ECO:0000250|UniProtKB:P00396 |
Chain | Residue | Details |
a | TYR245 |
site_id | SWS_FT_FI18 |
Number of Residues | 1 |
Details | BINDING: axial binding residue => ECO:0000269|PubMed:30598554 |
Chain | Residue | Details |
a | HIS376 |
site_id | SWS_FT_FI19 |
Number of Residues | 2 |
Details | CROSSLNK: 1'-histidyl-3'-tyrosine (His-Tyr) => ECO:0000269|PubMed:30598554 |
Chain | Residue | Details |
a | HIS241 | |
a | TYR245 |