6YMK

Crystal structure of the SAM-SAH riboswitch with AMP

Functional Information from PDB Data

site_id	AC1
Number of Residues	7
Details	binding site for residue MTA A 101

Chain	Residue
A	C15
A	G16
A	U23
A	G24
B	U44
B	U45
B	G46

---

site_id	AC2
Number of Residues	7
Details	binding site for residue MTA B 101

Chain	Residue
A	G25
A	C26
B	U44
I	C22
I	U23
A	A14
A	G24

---

site_id	AC3
Number of Residues	7
Details	binding site for residue MTA C 101

Chain	Residue
C	C15
C	G16
C	U23
C	G24
D	U44
D	G46
N	A43

---

site_id	AC4
Number of Residues	1
Details	binding site for residue SO4 D 101

Chain	Residue
D	A51

---

site_id	AC5
Number of Residues	7
Details	binding site for residue MTA F 101

Chain	Residue
F	C15
F	G16
F	U23
F	G24
G	U44
G	U45
G	G46

---

site_id	AC6
Number of Residues	1
Details	binding site for residue NA F 102

Chain	Residue
F	C32

---

site_id	AC7
Number of Residues	7
Details	binding site for residue MTA G 101

Chain	Residue
F	A14
F	G24
F	G25
F	C26
G	U44
O	C22
O	U23

---

site_id	AC8
Number of Residues	8
Details	binding site for residue MTA I 101

Chain	Residue
B	A43
I	C15
I	G16
I	U23
I	G24
J	U44
J	U45
J	G46

---

site_id	AC9
Number of Residues	1
Details	binding site for residue SO4 J 101

Chain	Residue
J	A51

---

site_id	AD1
Number of Residues	8
Details	binding site for residue MTA M 101

Chain	Residue
C	C22
C	U23
M	A14
M	G24
M	G25
M	C26
M	HOH216
N	U44

---

site_id	AD2
Number of Residues	7
Details	binding site for residue MTA M 102

Chain	Residue
M	C15
M	G16
M	U23
M	G24
N	U44
N	U45
N	G46

---

site_id	AD3
Number of Residues	7
Details	binding site for residue MTA O 101

Chain	Residue
G	A43
O	C15
O	G16
O	U23
O	G24
P	U44
P	G46

---

site_id	AD4
Number of Residues	5
Details	binding site for Di-nucleotide CBV C 10 and A C 11

Chain	Residue
C	U9
C	C12
C	U28
C	G29
C	A30

---

site_id	AD5
Number of Residues	9
Details	binding site for Di-nucleotide CBV F 10 and A F 11

Chain	Residue
F	U9
F	C12
F	G27
F	U28
F	G29
F	A30
M	C18
N	C50
N	A51

---

site_id	AD6
Number of Residues	6
Details	binding site for Di-nucleotide CBV I 10 and A I 11

Chain	Residue
I	U9
I	C12
I	U28
I	G29
I	A30
I	HOH207

---

site_id	AD7
Number of Residues	12
Details	binding site for Di-nucleotide CBV M 10 and A M 11

Chain	Residue
M	HOH214
A	C18
A	HOH204
B	C50
B	A51
M	U9
M	C12
M	G27
M	U28
M	G29
M	A30
M	HOH212

---

site_id	AD8
Number of Residues	5
Details	binding site for Di-nucleotide CBV O 10 and A O 11

Chain	Residue
O	U9
O	C12
O	U28
O	G29
O	A30

---