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6YM4

Crystal structure of BAY-297 with PIP4K2A

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0001750cellular_componentphotoreceptor outer segment
A0001917cellular_componentphotoreceptor inner segment
A0005515molecular_functionprotein binding
A0005524molecular_functionATP binding
A0005634cellular_componentnucleus
A0005654cellular_componentnucleoplasm
A0005737cellular_componentcytoplasm
A0005764cellular_componentlysosome
A0005776cellular_componentautophagosome
A0005829cellular_componentcytosol
A0005886cellular_componentplasma membrane
A0006629biological_processlipid metabolic process
A0010506biological_processregulation of autophagy
A0016301molecular_functionkinase activity
A0016308molecular_function1-phosphatidylinositol-4-phosphate 5-kinase activity
A0016309molecular_function1-phosphatidylinositol-5-phosphate 4-kinase activity
A0016740molecular_functiontransferase activity
A0035855biological_processmegakaryocyte development
A0042803molecular_functionprotein homodimerization activity
A0046488biological_processphosphatidylinositol metabolic process
A0046627biological_processnegative regulation of insulin receptor signaling pathway
A0046854biological_processphosphatidylinositol phosphate biosynthetic process
A0052742molecular_functionphosphatidylinositol kinase activity
A0061909biological_processautophagosome-lysosome fusion
A0090119biological_processvesicle-mediated cholesterol transport
A1902635biological_process1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process
A2000786biological_processpositive regulation of autophagosome assembly
B0000166molecular_functionnucleotide binding
B0001750cellular_componentphotoreceptor outer segment
B0001917cellular_componentphotoreceptor inner segment
B0005515molecular_functionprotein binding
B0005524molecular_functionATP binding
B0005634cellular_componentnucleus
B0005654cellular_componentnucleoplasm
B0005737cellular_componentcytoplasm
B0005764cellular_componentlysosome
B0005776cellular_componentautophagosome
B0005829cellular_componentcytosol
B0005886cellular_componentplasma membrane
B0006629biological_processlipid metabolic process
B0010506biological_processregulation of autophagy
B0016301molecular_functionkinase activity
B0016308molecular_function1-phosphatidylinositol-4-phosphate 5-kinase activity
B0016309molecular_function1-phosphatidylinositol-5-phosphate 4-kinase activity
B0016740molecular_functiontransferase activity
B0035855biological_processmegakaryocyte development
B0042803molecular_functionprotein homodimerization activity
B0046488biological_processphosphatidylinositol metabolic process
B0046627biological_processnegative regulation of insulin receptor signaling pathway
B0046854biological_processphosphatidylinositol phosphate biosynthetic process
B0052742molecular_functionphosphatidylinositol kinase activity
B0061909biological_processautophagosome-lysosome fusion
B0090119biological_processvesicle-mediated cholesterol transport
B1902635biological_process1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process
B2000786biological_processpositive regulation of autophagosome assembly
Functional Information from PDB Data
site_idAC1
Number of Residues15
Detailsbinding site for residue P4Z A 501
ChainResidue
APHE134
ALYS209
AASP211
ATHR232
ALEU277
AHOH629
AHOH652
AILE143
ALYS145
AILE147
AMET155
APHE178
AILE194
AASN198
AVAL199

site_idAC2
Number of Residues4
Detailsbinding site for residue GOL A 502
ChainResidue
AASP35
AHIS135
ATHR146
AHOH628

site_idAC3
Number of Residues6
Detailsbinding site for residue GOL A 503
ChainResidue
AGLY171
AILE172
ATHR173
AGLN177
ALYS258
AHOH660

site_idAC4
Number of Residues15
Detailsbinding site for residue P4Z B 501
ChainResidue
BPHE134
BILE143
BLYS145
BILE147
BASP151
BMET155
BPHE178
BILE194
BASN198
BVAL199
BLYS209
BTHR232
BLEU277
BILE358
BHOH642

site_idAC5
Number of Residues4
Detailsbinding site for residue GOL B 502
ChainResidue
BASP35
BHIS135
BTHR146
BHOH629

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues12
DetailsRegion: {"description":"Required for interaction with PIP5K1A","evidences":[{"source":"UniProtKB","id":"Q8TBX8","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues4
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"19608861","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

246333

PDB entries from 2025-12-17

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