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6YKW

Neisseria gonorrhoeae Leucyl-tRNA Synthetase in Complex with Compound 11h

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0002161molecular_functionaminoacyl-tRNA deacylase activity
A0004812molecular_functionaminoacyl-tRNA ligase activity
A0004823molecular_functionleucine-tRNA ligase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006412biological_processtranslation
A0006418biological_processtRNA aminoacylation for protein translation
A0006429biological_processleucyl-tRNA aminoacylation
A0016874molecular_functionligase activity
A0106074biological_processaminoacyl-tRNA metabolism involved in translational fidelity
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue EDO A 1101
ChainResidue
ATRP223
AGLU301
ATYR339
AARG428
AHOH1241

site_idAC2
Number of Residues6
Detailsbinding site for residue EDO A 1102
ChainResidue
AHOH1241
AHOH1251
ATRP223
AARG430
ATRP432
ATYR554

site_idAC3
Number of Residues23
Detailsbinding site for residue OVZ A 1103
ChainResidue
AMET40
APHE41
APRO42
ATYR43
AHIS49
AMET50
AGLY51
AHIS52
AASN55
AASP80
APRO85
ATYR513
AGLY543
AGLY544
AGLU546
AHIS547
AHIS551
AGLN580
AMET582
AVAL583
ALYS634
AMET635
AGLY642

site_idAC4
Number of Residues3
Detailsbinding site for residue MG A 1104
ChainResidue
AHOH1203
AHOH1278
AHOH1294

site_idAC5
Number of Residues4
Detailsbinding site for residue ZN A 1105
ChainResidue
ACYS449
ACYS452
ACYS490
ACYS493

Functional Information from PROSITE/UniProt
site_idPS00178
Number of Residues12
DetailsAA_TRNA_LIGASE_I Aminoacyl-transfer RNA synthetases class-I signature. PypSGkLHMGHV
ChainResidueDetails
APRO42-VAL53

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues10
DetailsMotif: {"description":"'HIGH' region"}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues4
DetailsMotif: {"description":"'KMSKS' region"}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00049","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

247536

PDB entries from 2026-01-14

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