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6YKI

Crystal structure of YTHDC1 with compound DHU_DC1_092

Functional Information from GO Data
ChainGOidnamespacecontents
A0003723molecular_functionRNA binding
B0003723molecular_functionRNA binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue SO4 A 601
ChainResidue
AGLY344
ASER346
ALYS347
AHOH711

site_idAC2
Number of Residues10
Detailsbinding site for residue SO4 A 602
ChainResidue
AHOH743
AHOH769
AHOH828
BGLY344
BLYS347
AGLN478
AGLU479
AHOH702
AHOH719
AHOH728

site_idAC3
Number of Residues4
Detailsbinding site for residue SO4 A 603
ChainResidue
AHIS420
AHIS421
AHOH725
AHOH794

site_idAC4
Number of Residues7
Detailsbinding site for residue SO4 A 604
ChainResidue
AASN367
ATRP377
ASER378
ALEU439
AHOH705
AHOH717
AHOH832

site_idAC5
Number of Residues8
Detailsbinding site for residue OUZ B 701
ChainResidue
BTRP377
BSER378
BPRO431
BMET434
BSER435
BLEU439
BSO4706
BHOH815

site_idAC6
Number of Residues9
Detailsbinding site for residue OUZ B 702
ChainResidue
APRO464
ATRP465
AHIS468
AGLU481
BTYR350
BHIS427
BTRP428
BILE504
BHOH814

site_idAC7
Number of Residues7
Detailsbinding site for residue SO4 B 703
ChainResidue
BARG451
BGLU452
BHOH821
BHOH822
BHOH826
BHOH846
BHOH856

site_idAC8
Number of Residues6
Detailsbinding site for residue SO4 B 704
ChainResidue
BSER419
BHIS420
BHIS421
BARG451
BHOH854
BHOH884

site_idAC9
Number of Residues3
Detailsbinding site for residue SO4 B 705
ChainResidue
BARG404
BARG475
BASP476

site_idAD1
Number of Residues5
Detailsbinding site for residue SO4 B 706
ChainResidue
BSER362
BASN363
BASN367
BOUZ701
BHOH812

site_idAD2
Number of Residues7
Detailsbinding site for residue SO4 B 707
ChainResidue
BLYS385
BASN388
BARG392
BLYS457
BHOH805
BHOH843
BHOH920

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:31670957, ECO:0007744|PDB:6RT4, ECO:0007744|PDB:6RT5, ECO:0007744|PDB:6RT6, ECO:0007744|PDB:6RT7
ChainResidueDetails
ALYS361
AASP476
BLYS361
BASP476

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:25242552, ECO:0000269|PubMed:31670957, ECO:0007744|PDB:6RT4, ECO:0007744|PDB:6RT5, ECO:0007744|PDB:6RT6, ECO:0007744|PDB:6RT7
ChainResidueDetails
ATRP377
BTRP377

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:25242552
ChainResidueDetails
ATRP428
BTRP428

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:23186163
ChainResidueDetails
ASER424
BSER424

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:20068231
ChainResidueDetails
ASER435
BSER435

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PDB entries from 2024-07-10

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