Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6YKF

VcaM4I restriction endonuclease in the presence of 5mC-modified ssDNA

Functional Information from GO Data
ChainGOidnamespacecontents
A0004519molecular_functionendonuclease activity
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue SO4 A 401
ChainResidue
ASER64
AHIS65
AHOH513
AHOH516
AHOH555
AHOH851
AHOH892

site_idAC2
Number of Residues5
Detailsbinding site for residue SO4 A 402
ChainResidue
AHOH521
AHOH601
AHOH712
APRO135
AHIS136

site_idAC3
Number of Residues10
Detailsbinding site for residue SO4 A 403
ChainResidue
AASN27
AGLN32
ASER33
AHIS34
ATYR35
AHOH510
AHOH998
BDC1
BHOH201
BHOH225

site_idAC4
Number of Residues7
Detailsbinding site for residue SO4 A 404
ChainResidue
AHIS34
AASN37
ALYS292
AHOH587
AHOH818
AHOH949
AHOH991

site_idAC5
Number of Residues8
Detailsbinding site for residue SO4 A 405
ChainResidue
ALYS25
AALA178
ASER179
AILE180
AASP181
AGOL409
AHOH827
AHOH836

site_idAC6
Number of Residues13
Detailsbinding site for residue SO4 A 406
ChainResidue
ALYS28
AASN70
ATHR73
AALA83
AASN84
AASN84
AASP85
AHOH527
AHOH557
AHOH708
AHOH860
AHOH1034
AHOH1048

site_idAC7
Number of Residues16
Detailsbinding site for residue GOL A 407
ChainResidue
AALA78
AGLY79
AALA80
AASP81
ATRP82
AHOH506
AHOH520
AHOH545
AHOH662
AHOH726
AHOH871
AHOH1011
B5CM3
BGOL101
BHOH204
BHOH207

site_idAC8
Number of Residues11
Detailsbinding site for residue GOL A 408
ChainResidue
APHE16
AGLU17
AILE197
ASER200
AARG201
AGLN204
AHOH598
AHOH616
AHOH1017
AHOH1023
AHOH1035

site_idAC9
Number of Residues13
Detailsbinding site for residue GOL A 409
ChainResidue
ASER68
ATYR69
AASN70
AASP85
AASP181
ASO4405
AHOH551
AHOH669
AHOH717
AHOH749
AHOH789
AHOH990
AHOH992

site_idAD1
Number of Residues15
Detailsbinding site for residue GOL A 410
ChainResidue
AHOH507
AHOH535
AHOH535
AHOH750
AHOH919
AHOH919
ALYS9
AGLN10
AGLN10
AASN53
AALA78
AALA78
AGOL411
AGOL411
AHOH507

site_idAD2
Number of Residues13
Detailsbinding site for residue GOL A 411
ChainResidue
AGLN10
AGLN10
APHE12
ALYS13
ALYS13
AGLN14
AGLN14
AGOL410
AGOL410
AHOH509
AHOH524
AHOH524
AHOH750

site_idAD3
Number of Residues10
Detailsbinding site for residue GOL A 412
ChainResidue
ALYS103
AALA104
AILE106
ASER148
AASN273
AHOH599
AHOH642
AHOH654
AHOH943
AHOH1056

site_idAD4
Number of Residues10
Detailsbinding site for residue GOL A 413
ChainResidue
AASP107
ASER148
AGLU151
AASN218
ALYS271
AHOH502
AHOH573
AHOH705
AHOH862
AHOH978

site_idAD5
Number of Residues12
Detailsbinding site for residue GOL A 414
ChainResidue
ALEU55
AGLU97
ALYS99
AARG101
AHOH512
AHOH577
AHOH577
AHOH618
AHOH618
AHOH638
AHOH824
AHOH882

site_idAD6
Number of Residues3
Detailsbinding site for residue CL A 415
ChainResidue
ATYR67
ASER68
AHOH748

site_idAD7
Number of Residues11
Detailsbinding site for residue GOL A 416
ChainResidue
AGLY156
APHE157
ATHR160
AARG199
ALYS217
AASN218
ALEU220
ALYS255
AHOH519
AHOH604
AHOH853

site_idAD8
Number of Residues8
Detailsbinding site for residue SO4 A 417
ChainResidue
ATHR31
AGLN32
ASER291
ALYS292
AGLN293
AHOH653
AHOH685
AHOH764

site_idAD9
Number of Residues4
Detailsbinding site for residue SO4 A 418
ChainResidue
AASN232
AASN233
AHOH503
AHOH670

site_idAE1
Number of Residues5
Detailsbinding site for residue SO4 A 419
ChainResidue
AARG201
ALEU237
AHOH546
AHOH585
AHOH609

site_idAE2
Number of Residues6
Detailsbinding site for residue SO4 A 420
ChainResidue
ATHR164
AALA167
AARG192
AHOH614
AHOH886
AHOH890

site_idAE3
Number of Residues13
Detailsbinding site for residue GOL B 101
ChainResidue
ALYS9
AGLN10
AGLN128
AGOL407
AHOH506
AHOH520
AHOH847
AHOH873
B5CM3
BDA4
BDG5
BSO4102
BHOH207

site_idAE4
Number of Residues10
Detailsbinding site for residue SO4 B 102
ChainResidue
ALYS9
BDA4
BDG5
BDG5
BGOL101
BHOH209
BHOH215
BHOH219
BHOH223
BHOH224

227111

PDB entries from 2024-11-06

PDB statisticsPDBj update infoContact PDBjnumon