6YKB
[Fe]-hydrogenase from Methanolacinia paynteri in complex with GMP at 1.55-A resolution
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0006730 | biological_process | one-carbon metabolic process |
| A | 0015948 | biological_process | methanogenesis |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0019386 | biological_process | methanogenesis, from carbon dioxide |
| A | 0047068 | molecular_function | N5,N10-methenyltetrahydromethanopterin hydrogenase activity |
| C | 0006730 | biological_process | one-carbon metabolic process |
| C | 0015948 | biological_process | methanogenesis |
| C | 0016491 | molecular_function | oxidoreductase activity |
| C | 0019386 | biological_process | methanogenesis, from carbon dioxide |
| C | 0047068 | molecular_function | N5,N10-methenyltetrahydromethanopterin hydrogenase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 19 |
| Details | binding site for residue 5GP A 401 |
| Chain | Residue |
| A | GLY10 |
| A | LEU148 |
| A | PRO149 |
| A | ILE157 |
| A | HOH530 |
| A | HOH587 |
| A | HOH589 |
| A | HOH615 |
| A | HOH621 |
| A | HOH655 |
| A | HOH694 |
| A | GLY12 |
| A | SER65 |
| A | ASP66 |
| A | PRO67 |
| A | PRO113 |
| A | PRO114 |
| A | ASP134 |
| A | TRP147 |
| site_id | AC2 |
| Number of Residues | 7 |
| Details | binding site for residue FMT A 402 |
| Chain | Residue |
| A | SER320 |
| A | HOH507 |
| A | HOH531 |
| C | ALA204 |
| C | VAL205 |
| C | MET208 |
| C | LYS209 |
| site_id | AC3 |
| Number of Residues | 3 |
| Details | binding site for residue FMT A 403 |
| Chain | Residue |
| A | ASP152 |
| A | HOH553 |
| C | MET284 |
| site_id | AC4 |
| Number of Residues | 4 |
| Details | binding site for residue FMT A 404 |
| Chain | Residue |
| A | ASN91 |
| A | PRO92 |
| A | HOH572 |
| A | HOH679 |
| site_id | AC5 |
| Number of Residues | 2 |
| Details | binding site for residue FMT A 405 |
| Chain | Residue |
| A | LYS89 |
| A | HOH608 |
| site_id | AC6 |
| Number of Residues | 3 |
| Details | binding site for residue FMT A 406 |
| Chain | Residue |
| A | ASP78 |
| A | LYS98 |
| A | HOH594 |
| site_id | AC7 |
| Number of Residues | 21 |
| Details | binding site for residue 5GP C 401 |
| Chain | Residue |
| C | LEU9 |
| C | GLY10 |
| C | GLY12 |
| C | SER65 |
| C | ASP66 |
| C | PRO67 |
| C | PRO113 |
| C | PRO114 |
| C | ASP134 |
| C | TRP147 |
| C | LEU148 |
| C | PRO149 |
| C | ILE157 |
| C | HOH515 |
| C | HOH516 |
| C | HOH567 |
| C | HOH573 |
| C | HOH588 |
| C | HOH640 |
| C | HOH658 |
| C | HOH673 |
| site_id | AC8 |
| Number of Residues | 3 |
| Details | binding site for residue FMT C 402 |
| Chain | Residue |
| C | GLY58 |
| C | HOH575 |
| C | HOH632 |
| site_id | AC9 |
| Number of Residues | 4 |
| Details | binding site for residue FMT C 403 |
| Chain | Residue |
| A | LYS299 |
| C | PRO242 |
| C | GLU244 |
| C | HOH629 |
| site_id | AD1 |
| Number of Residues | 3 |
| Details | binding site for residue FMT C 404 |
| Chain | Residue |
| C | GLU30 |
| C | HIS237 |
| C | HOH529 |
| site_id | AD2 |
| Number of Residues | 5 |
| Details | binding site for residue GOL C 405 |
| Chain | Residue |
| A | ILE274 |
| A | LEU275 |
| C | THR16 |
| C | ALA19 |
| C | HOH521 |
