6YKA
Asymmetric [Fe]-hydrogenase from Methanolacinia paynteri apo and in complex with FeGP at 2.1-A resolution
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0006730 | biological_process | one-carbon metabolic process |
| A | 0015948 | biological_process | methanogenesis |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0019386 | biological_process | methanogenesis, from carbon dioxide |
| A | 0047068 | molecular_function | N5,N10-methenyltetrahydromethanopterin hydrogenase activity |
| B | 0006730 | biological_process | one-carbon metabolic process |
| B | 0015948 | biological_process | methanogenesis |
| B | 0016491 | molecular_function | oxidoreductase activity |
| B | 0019386 | biological_process | methanogenesis, from carbon dioxide |
| B | 0047068 | molecular_function | N5,N10-methenyltetrahydromethanopterin hydrogenase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 2 |
| Details | binding site for residue EDO A 401 |
| Chain | Residue |
| A | THR16 |
| A | EDO402 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | binding site for residue EDO A 402 |
| Chain | Residue |
| A | THR16 |
| A | HIS17 |
| A | EDO401 |
| A | EDO403 |
| A | HOH567 |
| site_id | AC3 |
| Number of Residues | 3 |
| Details | binding site for residue EDO A 403 |
| Chain | Residue |
| A | EDO402 |
| A | TRP147 |
| A | CYS175 |
| site_id | AC4 |
| Number of Residues | 2 |
| Details | binding site for residue EDO A 404 |
| Chain | Residue |
| A | ASP319 |
| A | SER320 |
| site_id | AC5 |
| Number of Residues | 5 |
| Details | binding site for residue PGE A 405 |
| Chain | Residue |
| A | GLU222 |
| A | THR226 |
| A | LYS298 |
| A | LYS299 |
| A | VAL300 |
| site_id | AC6 |
| Number of Residues | 3 |
| Details | binding site for residue EDO A 406 |
| Chain | Residue |
| A | GLN211 |
| A | TYR213 |
| A | PHE239 |
| site_id | AC7 |
| Number of Residues | 8 |
| Details | binding site for residue GOL A 407 |
| Chain | Residue |
| A | GLU93 |
| A | THR94 |
| A | PRO97 |
| A | LYS98 |
| A | ASP319 |
| A | ASN322 |
| A | PRO331 |
| A | HOH515 |
| site_id | AC8 |
| Number of Residues | 5 |
| Details | binding site for residue GOL A 408 |
| Chain | Residue |
| A | LYS37 |
| A | TYR55 |
| A | ALA279 |
| A | GLY280 |
| B | LYS303 |
| site_id | AC9 |
| Number of Residues | 6 |
| Details | binding site for residue PGE B 401 |
| Chain | Residue |
| A | LYS303 |
| B | MET272 |
| B | PRO278 |
| B | ALA279 |
| B | GLY280 |
| B | PHE281 |
| site_id | AD1 |
| Number of Residues | 3 |
| Details | binding site for residue EDO B 402 |
| Chain | Residue |
| A | PHE281 |
| B | LYS150 |
| B | CYS175 |
| site_id | AD2 |
| Number of Residues | 23 |
| Details | binding site for residue FE9 B 403 |
| Chain | Residue |
| B | GLY10 |
| B | GLY12 |
| B | HIS17 |
| B | SER65 |
| B | ASP66 |
| B | PRO67 |
| B | PRO113 |
| B | PRO114 |
| B | ASP134 |
| B | TRP147 |
| B | LEU148 |
| B | PRO149 |
| B | ILE157 |
| B | ALA174 |
| B | CYS175 |
| B | THR176 |
| B | HIS201 |
| B | PRO202 |
| B | GLY203 |
| B | ALA204 |
| B | VAL205 |
| B | HOH504 |
| B | HOH535 |
| site_id | AD3 |
| Number of Residues | 3 |
| Details | binding site for residue GOL B 404 |
| Chain | Residue |
| B | MET272 |
| B | ASN273 |
| B | GLY276 |
