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6YKA

Asymmetric [Fe]-hydrogenase from Methanolacinia paynteri apo and in complex with FeGP at 2.1-A resolution

Functional Information from GO Data
ChainGOidnamespacecontents
A0019386biological_processmethanogenesis, from carbon dioxide
A0047068molecular_functionN5,N10-methenyltetrahydromethanopterin hydrogenase activity
B0019386biological_processmethanogenesis, from carbon dioxide
B0047068molecular_functionN5,N10-methenyltetrahydromethanopterin hydrogenase activity
Functional Information from PDB Data
site_idAC1
Number of Residues2
Detailsbinding site for residue EDO A 401
ChainResidue
ATHR16
AEDO402

site_idAC2
Number of Residues5
Detailsbinding site for residue EDO A 402
ChainResidue
ATHR16
AHIS17
AEDO401
AEDO403
AHOH567

site_idAC3
Number of Residues3
Detailsbinding site for residue EDO A 403
ChainResidue
AEDO402
ATRP147
ACYS175

site_idAC4
Number of Residues2
Detailsbinding site for residue EDO A 404
ChainResidue
AASP319
ASER320

site_idAC5
Number of Residues5
Detailsbinding site for residue PGE A 405
ChainResidue
AGLU222
ATHR226
ALYS298
ALYS299
AVAL300

site_idAC6
Number of Residues3
Detailsbinding site for residue EDO A 406
ChainResidue
AGLN211
ATYR213
APHE239

site_idAC7
Number of Residues8
Detailsbinding site for residue GOL A 407
ChainResidue
AGLU93
ATHR94
APRO97
ALYS98
AASP319
AASN322
APRO331
AHOH515

site_idAC8
Number of Residues5
Detailsbinding site for residue GOL A 408
ChainResidue
ALYS37
ATYR55
AALA279
AGLY280
BLYS303

site_idAC9
Number of Residues6
Detailsbinding site for residue PGE B 401
ChainResidue
ALYS303
BMET272
BPRO278
BALA279
BGLY280
BPHE281

site_idAD1
Number of Residues3
Detailsbinding site for residue EDO B 402
ChainResidue
APHE281
BLYS150
BCYS175

site_idAD2
Number of Residues23
Detailsbinding site for residue FE9 B 403
ChainResidue
BGLY10
BGLY12
BHIS17
BSER65
BASP66
BPRO67
BPRO113
BPRO114
BASP134
BTRP147
BLEU148
BPRO149
BILE157
BALA174
BCYS175
BTHR176
BHIS201
BPRO202
BGLY203
BALA204
BVAL205
BHOH504
BHOH535

site_idAD3
Number of Residues3
Detailsbinding site for residue GOL B 404
ChainResidue
BMET272
BASN273
BGLY276

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PDB entries from 2024-07-17

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