6YK9
[Fe]-hydrogenase from Methanolacinia paynteri with bound guanylylpyridinol at 1.7-A resolution
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0006730 | biological_process | one-carbon metabolic process |
| A | 0015948 | biological_process | methanogenesis |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0019386 | biological_process | methanogenesis, from carbon dioxide |
| A | 0047068 | molecular_function | N5,N10-methenyltetrahydromethanopterin hydrogenase activity |
| B | 0006730 | biological_process | one-carbon metabolic process |
| B | 0015948 | biological_process | methanogenesis |
| B | 0016491 | molecular_function | oxidoreductase activity |
| B | 0019386 | biological_process | methanogenesis, from carbon dioxide |
| B | 0047068 | molecular_function | N5,N10-methenyltetrahydromethanopterin hydrogenase activity |
| C | 0006730 | biological_process | one-carbon metabolic process |
| C | 0015948 | biological_process | methanogenesis |
| C | 0016491 | molecular_function | oxidoreductase activity |
| C | 0019386 | biological_process | methanogenesis, from carbon dioxide |
| C | 0047068 | molecular_function | N5,N10-methenyltetrahydromethanopterin hydrogenase activity |
| E | 0006730 | biological_process | one-carbon metabolic process |
| E | 0015948 | biological_process | methanogenesis |
| E | 0016491 | molecular_function | oxidoreductase activity |
| E | 0019386 | biological_process | methanogenesis, from carbon dioxide |
| E | 0047068 | molecular_function | N5,N10-methenyltetrahydromethanopterin hydrogenase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 25 |
| Details | binding site for residue FEG A 401 |
| Chain | Residue |
| A | GLY12 |
| A | LEU148 |
| A | PRO149 |
| A | LYS150 |
| A | ILE157 |
| A | CYS175 |
| A | THR176 |
| A | HOH503 |
| A | HOH512 |
| A | HOH519 |
| A | HOH538 |
| A | THR16 |
| A | HOH550 |
| A | HOH637 |
| A | HOH642 |
| A | HOH663 |
| A | HOH687 |
| A | HOH706 |
| A | SER65 |
| A | ASP66 |
| A | PRO67 |
| A | PRO113 |
| A | PRO114 |
| A | ASP134 |
| A | TRP147 |
| site_id | AC2 |
| Number of Residues | 6 |
| Details | binding site for residue GLY A 402 |
| Chain | Residue |
| A | TYR228 |
| A | LYS232 |
| A | HIS237 |
| A | ALA238 |
| A | HOH530 |
| A | HOH695 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | binding site for residue EDO A 403 |
| Chain | Residue |
| A | HOH552 |
| A | HOH688 |
| C | ASN273 |
| C | ILE274 |
| site_id | AC4 |
| Number of Residues | 20 |
| Details | binding site for residue 5GP B 401 |
| Chain | Residue |
| B | LEU9 |
| B | GLY10 |
| B | GLY12 |
| B | SER65 |
| B | ASP66 |
| B | PRO67 |
| B | PRO113 |
| B | PRO114 |
| B | ASP134 |
| B | TRP147 |
| B | LEU148 |
| B | PRO149 |
| B | ILE157 |
| B | HOH503 |
| B | HOH545 |
| B | HOH583 |
| B | HOH591 |
| B | HOH616 |
| B | HOH655 |
| B | HOH658 |
| site_id | AC5 |
| Number of Residues | 5 |
| Details | binding site for residue GLY B 402 |
| Chain | Residue |
| B | TYR228 |
| B | HIS237 |
| B | ALA238 |
| B | HOH635 |
| B | HOH646 |
| site_id | AC6 |
| Number of Residues | 17 |
| Details | binding site for residue 5GP C 401 |
| Chain | Residue |
| C | LEU9 |
| C | GLY10 |
| C | GLY12 |
| C | SER65 |
| C | ASP66 |
| C | PRO67 |
| C | PRO113 |
| C | PRO114 |
| C | ASP134 |
| C | TRP147 |
| C | LEU148 |
| C | PRO149 |
| C | ILE157 |
| C | HOH551 |
| C | HOH562 |
| C | HOH582 |
| C | HOH640 |
| site_id | AC7 |
| Number of Residues | 14 |
| Details | binding site for residue GMP E 401 |
| Chain | Residue |
| E | LEU9 |
| E | GLY10 |
| E | GLY12 |
| E | SER65 |
| E | ASP66 |
| E | PRO67 |
| E | PRO113 |
| E | PRO114 |
| E | ASP134 |
| E | TRP147 |
| E | LEU148 |
| E | PRO149 |
| E | HOH558 |
| E | HOH683 |
