6YK9
[Fe]-hydrogenase from Methanolacinia paynteri with bound guanylylpyridinol at 1.7-A resolution
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0019386 | biological_process | methanogenesis, from carbon dioxide |
A | 0047068 | molecular_function | N5,N10-methenyltetrahydromethanopterin hydrogenase activity |
B | 0019386 | biological_process | methanogenesis, from carbon dioxide |
B | 0047068 | molecular_function | N5,N10-methenyltetrahydromethanopterin hydrogenase activity |
C | 0019386 | biological_process | methanogenesis, from carbon dioxide |
C | 0047068 | molecular_function | N5,N10-methenyltetrahydromethanopterin hydrogenase activity |
E | 0019386 | biological_process | methanogenesis, from carbon dioxide |
E | 0047068 | molecular_function | N5,N10-methenyltetrahydromethanopterin hydrogenase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 25 |
Details | binding site for residue FEG A 401 |
Chain | Residue |
A | GLY12 |
A | LEU148 |
A | PRO149 |
A | LYS150 |
A | ILE157 |
A | CYS175 |
A | THR176 |
A | HOH503 |
A | HOH512 |
A | HOH519 |
A | HOH538 |
A | THR16 |
A | HOH550 |
A | HOH637 |
A | HOH642 |
A | HOH663 |
A | HOH687 |
A | HOH706 |
A | SER65 |
A | ASP66 |
A | PRO67 |
A | PRO113 |
A | PRO114 |
A | ASP134 |
A | TRP147 |
site_id | AC2 |
Number of Residues | 6 |
Details | binding site for residue GLY A 402 |
Chain | Residue |
A | TYR228 |
A | LYS232 |
A | HIS237 |
A | ALA238 |
A | HOH530 |
A | HOH695 |
site_id | AC3 |
Number of Residues | 4 |
Details | binding site for residue EDO A 403 |
Chain | Residue |
A | HOH552 |
A | HOH688 |
C | ASN273 |
C | ILE274 |
site_id | AC4 |
Number of Residues | 20 |
Details | binding site for residue 5GP B 401 |
Chain | Residue |
B | LEU9 |
B | GLY10 |
B | GLY12 |
B | SER65 |
B | ASP66 |
B | PRO67 |
B | PRO113 |
B | PRO114 |
B | ASP134 |
B | TRP147 |
B | LEU148 |
B | PRO149 |
B | ILE157 |
B | HOH503 |
B | HOH545 |
B | HOH583 |
B | HOH591 |
B | HOH616 |
B | HOH655 |
B | HOH658 |
site_id | AC5 |
Number of Residues | 5 |
Details | binding site for residue GLY B 402 |
Chain | Residue |
B | TYR228 |
B | HIS237 |
B | ALA238 |
B | HOH635 |
B | HOH646 |
site_id | AC6 |
Number of Residues | 17 |
Details | binding site for residue 5GP C 401 |
Chain | Residue |
C | LEU9 |
C | GLY10 |
C | GLY12 |
C | SER65 |
C | ASP66 |
C | PRO67 |
C | PRO113 |
C | PRO114 |
C | ASP134 |
C | TRP147 |
C | LEU148 |
C | PRO149 |
C | ILE157 |
C | HOH551 |
C | HOH562 |
C | HOH582 |
C | HOH640 |
site_id | AC7 |
Number of Residues | 14 |
Details | binding site for residue GMP E 401 |
Chain | Residue |
E | LEU9 |
E | GLY10 |
E | GLY12 |
E | SER65 |
E | ASP66 |
E | PRO67 |
E | PRO113 |
E | PRO114 |
E | ASP134 |
E | TRP147 |
E | LEU148 |
E | PRO149 |
E | HOH558 |
E | HOH683 |