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6YGO

TGT W95F mutant labelled mit 5F-Trp crystallised at pH 8.5

Functional Information from GO Data
ChainGOidnamespacecontents
A0002099biological_processtRNA wobble guanine modification
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006400biological_processtRNA modification
A0008033biological_processtRNA processing
A0008479molecular_functiontRNA-guanosine(34) queuine transglycosylase activity
A0008616biological_processtRNA queuosine(34) biosynthetic process
A0016740molecular_functiontransferase activity
A0016757molecular_functionglycosyltransferase activity
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 401
ChainResidue
ACYS318
ACYS320
ACYS323
AHIS349

site_idAC2
Number of Residues6
Detailsbinding site for residue GOL A 402
ChainResidue
AHOH662
AGLU317
ALYS360
APHE373
AARG380
AHOH562

site_idAC3
Number of Residues7
Detailsbinding site for residue GOL A 403
ChainResidue
APRO56
AGLU57
AGLY94
APHE95
AASP96
AARG97
AHOH556

site_idAC4
Number of Residues8
Detailsbinding site for residue GOL A 404
ChainResidue
AGLN117
ASER118
AARG174
APRO252
AASP254
ALYS255
AHOH517
AHOH673

site_idAC5
Number of Residues6
Detailsbinding site for residue GOL A 405
ChainResidue
ALEU311
ACYS323
AFTR326
ASER327
AHOH725
AHOH780

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Proton acceptor => ECO:0000255|HAMAP-Rule:MF_00168, ECO:0000305|PubMed:12949492
ChainResidueDetails
AASP102

site_idSWS_FT_FI2
Number of Residues1
DetailsACT_SITE: Nucleophile => ECO:0000255|HAMAP-Rule:MF_00168, ECO:0000305|PubMed:12949492
ChainResidueDetails
AASP280

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00168, ECO:0000269|PubMed:12949492
ChainResidueDetails
AASP102
AASP156
AGLN203
AGLY230

site_idSWS_FT_FI4
Number of Residues4
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00168, ECO:0000269|PubMed:10413112, ECO:0000269|PubMed:11178905, ECO:0000269|PubMed:11921407, ECO:0000269|PubMed:12646024, ECO:0000269|PubMed:12909636, ECO:0000269|PubMed:12949492, ECO:0000269|PubMed:14523925, ECO:0000269|PubMed:19627989, ECO:0000269|PubMed:8654383, ECO:0000269|PubMed:8961936
ChainResidueDetails
ACYS318
ACYS320
ACYS323
AHIS349

Catalytic Information from CSA
site_idMCSA1
Number of Residues6
DetailsM-CSA 881
ChainResidueDetails
AASP102proton shuttle (general acid/base)
APRO284covalent catalysis
AFTR326metal ligand
AARG328metal ligand
AILE331metal ligand
AILE361metal ligand

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PDB entries from 2025-07-02

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