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6Y7G

Structure of the human RAB3C in complex with GDP

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0003924molecular_functionGTPase activity
A0005515molecular_functionprotein binding
A0005525molecular_functionGTP binding
A0005768cellular_componentendosome
A0005886cellular_componentplasma membrane
A0006887biological_processexocytosis
A0008021cellular_componentsynaptic vesicle
A0015031biological_processprotein transport
A0016020cellular_componentmembrane
A0016787molecular_functionhydrolase activity
A0017157biological_processregulation of exocytosis
A0019882biological_processantigen processing and presentation
A0030742molecular_functionGTP-dependent protein binding
A0031489molecular_functionmyosin V binding
A0031982cellular_componentvesicle
A0046872molecular_functionmetal ion binding
A0048471cellular_componentperinuclear region of cytoplasm
B0000166molecular_functionnucleotide binding
B0003924molecular_functionGTPase activity
B0005515molecular_functionprotein binding
B0005525molecular_functionGTP binding
B0005768cellular_componentendosome
B0005886cellular_componentplasma membrane
B0006887biological_processexocytosis
B0008021cellular_componentsynaptic vesicle
B0015031biological_processprotein transport
B0016020cellular_componentmembrane
B0016787molecular_functionhydrolase activity
B0017157biological_processregulation of exocytosis
B0019882biological_processantigen processing and presentation
B0030742molecular_functionGTP-dependent protein binding
B0031489molecular_functionmyosin V binding
B0031982cellular_componentvesicle
B0046872molecular_functionmetal ion binding
B0048471cellular_componentperinuclear region of cytoplasm
Functional Information from PDB Data
site_idAC1
Number of Residues18
Detailsbinding site for residue GDP A 301
ChainResidue
ASER40
AASP146
AMET147
ASER173
AALA174
ALYS175
AMG303
AHOH404
AHOH407
AHOH418
AVAL41
AGLY42
ALYS43
ATHR44
ASER45
APHE55
AASN143
ALYS144

site_idAC2
Number of Residues7
Detailsbinding site for residue BTB A 302
ChainResidue
AASP146
AMET147
AGLU148
AASP149
AGLU150
BHIS160
BGLN164

site_idAC3
Number of Residues5
Detailsbinding site for residue MG A 303
ChainResidue
ATHR44
AGDP301
AHOH404
AHOH406
AHOH407

site_idAC4
Number of Residues18
Detailsbinding site for residue GDP B 301
ChainResidue
BSER40
BVAL41
BGLY42
BLYS43
BTHR44
BSER45
BPHE55
BASN143
BLYS144
BASP146
BMET147
BSER173
BALA174
BLYS175
BMG303
BHOH401
BHOH405
BHOH413

site_idAC5
Number of Residues7
Detailsbinding site for residue BTB B 302
ChainResidue
AHIS160
AGLN164
BASP146
BMET147
BGLU148
BASP149
BGLU150

site_idAC6
Number of Residues6
Detailsbinding site for residue MG B 303
ChainResidue
BTHR44
BGDP301
BHOH401
BHOH405
BHOH413
BHOH428

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues27
DetailsBinding site: {"evidences":[{"source":"UniProtKB","id":"P10949","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"UniProtKB","id":"Q63941","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues18
DetailsMotif: {"description":"Switch 2","evidences":[{"source":"UniProtKB","id":"P10949","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues1
DetailsModified residue: {"description":"Phosphothreonine; by LRRK2","evidences":[{"source":"PubMed","id":"29125462","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

238582

PDB entries from 2025-07-09

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