Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

6Y0J

Cytochrome c in complex with phosphonato-calix[6]arene and sulfonato-calix[8]arene

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0005515	molecular_function	protein binding
A	0005739	cellular_component	mitochondrion
A	0005758	cellular_component	mitochondrial intermembrane space
A	0006122	biological_process	mitochondrial electron transport, ubiquinol to cytochrome c
A	0006123	biological_process	mitochondrial electron transport, cytochrome c to oxygen
A	0009055	molecular_function	electron transfer activity
A	0020037	molecular_function	heme binding
A	0046872	molecular_function	metal ion binding
A	0070469	cellular_component	respirasome
A	1901612	molecular_function	cardiolipin binding
B	0005515	molecular_function	protein binding
B	0005739	cellular_component	mitochondrion
B	0005758	cellular_component	mitochondrial intermembrane space
B	0006122	biological_process	mitochondrial electron transport, ubiquinol to cytochrome c
B	0006123	biological_process	mitochondrial electron transport, cytochrome c to oxygen
B	0009055	molecular_function	electron transfer activity
B	0020037	molecular_function	heme binding
B	0046872	molecular_function	metal ion binding
B	0070469	cellular_component	respirasome
B	1901612	molecular_function	cardiolipin binding
C	0005515	molecular_function	protein binding
C	0005739	cellular_component	mitochondrion
C	0005758	cellular_component	mitochondrial intermembrane space
C	0006122	biological_process	mitochondrial electron transport, ubiquinol to cytochrome c
C	0006123	biological_process	mitochondrial electron transport, cytochrome c to oxygen
C	0009055	molecular_function	electron transfer activity
C	0020037	molecular_function	heme binding
C	0046872	molecular_function	metal ion binding
C	0070469	cellular_component	respirasome
C	1901612	molecular_function	cardiolipin binding
D	0005515	molecular_function	protein binding
D	0005739	cellular_component	mitochondrion
D	0005758	cellular_component	mitochondrial intermembrane space
D	0006122	biological_process	mitochondrial electron transport, ubiquinol to cytochrome c
D	0006123	biological_process	mitochondrial electron transport, cytochrome c to oxygen
D	0009055	molecular_function	electron transfer activity
D	0020037	molecular_function	heme binding
D	0046872	molecular_function	metal ion binding
D	0070469	cellular_component	respirasome
D	1901612	molecular_function	cardiolipin binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	21
Details	binding site for residue HEC A 201

Chain	Residue
A	ARG13
A	TYR46
A	TYR48
A	THR49
A	ASN52
A	TRP59
A	MET64
A	LEU68
A	THR78
A	LYS79
A	MET80
A	CYS14
A	LEU94
A	HOH301
A	CYS17
A	HIS18
A	LEU32
A	ILE35
A	ARG38
A	SER40
A	GLY41

site_id	AC2
Number of Residues	11
Details	binding site for residue 7AZ B 202

Chain	Residue
A	LYS4
A	LYS100
B	SER2
B	ALA3
B	LYS4
B	ALA7
B	LYS100
B	7AZ203
B	HOH304
C	LYS87
C	LYS89

site_id	AC3
Number of Residues	8
Details	binding site for residue 7AZ B 203

Chain	Residue
A	ALA3
A	LYS4
A	TYR97
A	LYS100
B	LYS4
B	LYS100
B	7AZ202
C	LYS89

site_id	AC4
Number of Residues	20
Details	binding site for residue EVB B 204

Chain	Residue
A	ARG13
A	THR69
A	ASN70
A	LYS72
A	LYS73
A	ALA81
A	PHE82
A	GLY83
A	GLY84
A	LYS86
A	HOH309
B	ASN70
B	LYS72
B	LYS73
B	GLY83
B	GLY84
B	LEU85
B	LYS86
B	LYS87
B	HOH305

site_id	AC5
Number of Residues	8
Details	binding site for residue 7AZ C 202

Chain	Residue
A	LYS89
C	ALA3
C	LYS4
C	ALA7
C	LYS100
D	LYS4
D	LYS100
D	7AZ202

site_id	AC6
Number of Residues	14
Details	binding site for residue EVB C 203

Chain	Residue
C	ARG13
C	THR69
C	ASN70
C	LYS72
C	ALA81
C	PHE82
C	GLY83
D	ASN70
D	LYS72
D	LYS73
D	GLY83
D	GLY84
D	LYS86
D	LYS87

site_id	AC7
Number of Residues	9
Details	binding site for residue 7AZ D 202

Chain	Residue
C	LYS4
C	LYS100
C	7AZ202
D	SER2
D	ALA3
D	LYS4
D	ALA7
D	LYS100
D	HOH304

site_id	AC8
Number of Residues	21
Details	binding site for Di-peptide HEC B 201 and CYS B 14

Chain	Residue
B	ILE35
B	SER40
B	GLY41
B	TYR46
B	TYR48
B	THR49
B	ASN52
B	TRP59
B	MET64
B	LEU68
B	THR78
B	LYS79
B	MET80
B	PHE10
B	ARG13
B	LEU15
B	GLN16
B	CYS17
B	HIS18
B	PRO30
B	LEU32

site_id	AC9
Number of Residues	21
Details	binding site for Di-peptide HEC B 201 and CYS B 14

Chain	Residue
B	PHE10
B	ARG13
B	LEU15
B	GLN16
B	CYS17
B	HIS18
B	PRO30
B	LEU32
B	ILE35
B	SER40
B	GLY41
B	TYR46
B	TYR48
B	THR49
B	ASN52
B	TRP59
B	MET64
B	LEU68
B	THR78
B	LYS79
B	MET80

site_id	AD1
Number of Residues	22
Details	binding site for Di-peptide HEC B 201 and CYS B 17

Chain	Residue
B	ARG13
B	CYS14
B	LEU15
B	GLN16
B	HIS18
B	LYS27
B	GLY29
B	PRO30
B	LEU32
B	ILE35
B	SER40
B	GLY41
B	TYR46
B	TYR48
B	THR49
B	ASN52
B	TRP59
B	MET64
B	LEU68
B	THR78
B	LYS79
B	MET80

site_id	AD2
Number of Residues	22
Details	binding site for Di-peptide HEC B 201 and CYS B 17

Chain	Residue
B	ARG13
B	CYS14
B	LEU15
B	GLN16
B	HIS18
B	LYS27
B	GLY29
B	PRO30
B	LEU32
B	ILE35
B	SER40
B	GLY41
B	TYR46
B	TYR48
B	THR49
B	ASN52
B	TRP59
B	MET64
B	LEU68
B	THR78
B	LYS79
B	MET80

site_id	AD3
Number of Residues	19
Details	binding site for Di-peptide HEC C 201 and CYS C 14

Chain	Residue
C	PHE10
C	ARG13
C	LEU15
C	GLN16
C	CYS17
C	HIS18
C	VAL28
C	LEU32
C	ILE35
C	SER40
C	GLY41
C	TYR46
C	TYR48
C	THR49
C	ASN52
C	LEU68
C	THR78
C	LYS79
C	MET80

site_id	AD4
Number of Residues	20
Details	binding site for Di-peptide HEC C 201 and CYS C 17

Chain	Residue
C	ARG13
C	CYS14
C	LEU15
C	GLN16
C	HIS18
C	LYS27
C	VAL28
C	GLY29
C	LEU32
C	ILE35
C	SER40
C	GLY41
C	TYR46
C	TYR48
C	THR49
C	ASN52
C	LEU68
C	THR78
C	LYS79
C	MET80

site_id	AD5
Number of Residues	20
Details	binding site for Di-peptide HEC C 201 and CYS C 17

Chain	Residue
C	ARG13
C	CYS14
C	LEU15
C	GLN16
C	HIS18
C	LYS27
C	VAL28
C	GLY29
C	LEU32
C	ILE35
C	SER40
C	GLY41
C	TYR46
C	TYR48
C	THR49
C	ASN52
C	LEU68
C	THR78
C	LYS79
C	MET80

site_id	AD6
Number of Residues	19
Details	binding site for Di-peptide HEC C 201 and CYS C 14

Chain	Residue
C	PHE10
C	ARG13
C	LEU15
C	GLN16
C	CYS17
C	HIS18
C	VAL28
C	LEU32
C	ILE35
C	SER40
C	GLY41
C	TYR46
C	TYR48
C	THR49
C	ASN52
C	LEU68
C	THR78
C	LYS79
C	MET80

site_id	AD7
Number of Residues	25
Details	binding site for Di-peptide HEC D 201 and CYS D 14

Chain	Residue
D	PHE10
D	ARG13
D	LEU15
D	GLN16
D	CYS17
D	HIS18
D	VAL28
D	PRO30
D	LEU32
D	ILE35
D	ARG38
D	SER40
D	GLY41
D	TYR46
D	TYR48
D	THR49
D	ASN52
D	TRP59
D	MET64
D	TYR67
D	LEU68
D	THR78
D	LYS79
D	MET80
D	LEU94

site_id	AD8
Number of Residues	26
Details	binding site for Di-peptide HEC D 201 and CYS D 17

Chain	Residue
D	ARG13
D	CYS14
D	LEU15
D	GLN16
D	HIS18
D	LYS27
D	VAL28
D	GLY29
D	PRO30
D	LEU32
D	ILE35
D	ARG38
D	SER40
D	GLY41
D	TYR46
D	TYR48
D	THR49
D	ASN52
D	TRP59
D	MET64
D	TYR67
D	LEU68
D	THR78
D	LYS79
D	MET80
D	LEU94

site_id	AD9
Number of Residues	26
Details	binding site for Di-peptide HEC D 201 and CYS D 17

Chain	Residue
D	ARG13
D	CYS14
D	LEU15
D	GLN16
D	HIS18
D	LYS27
D	VAL28
D	GLY29
D	PRO30
D	LEU32
D	ILE35
D	ARG38
D	SER40
D	GLY41
D	TYR46
D	TYR48
D	THR49
D	ASN52
D	TRP59
D	MET64
D	TYR67
D	LEU68
D	THR78
D	LYS79
D	MET80
D	LEU94

site_id	AE1
Number of Residues	25
Details	binding site for Di-peptide HEC D 201 and CYS D 14

Chain	Residue
D	PHE10
D	ARG13
D	LEU15
D	GLN16
D	CYS17
D	HIS18
D	VAL28
D	PRO30
D	LEU32
D	ILE35
D	ARG38
D	SER40
D	GLY41
D	TYR46
D	TYR48
D	THR49
D	ASN52
D	TRP59
D	MET64
D	TYR67
D	LEU68
D	THR78
D	LYS79
D	MET80
D	LEU94

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	8
Details	BINDING: covalent => ECO:0000269\|PubMed:11880631, ECO:0000269\|PubMed:18390544, ECO:0007744\|PDB:1KYO, ECO:0007744\|PDB:3CX5

Chain	Residue	Details
A	CYS14
A	CYS17
B	CYS14
B	CYS17
C	CYS14
C	CYS17
D	CYS14
D	CYS17

site_id	SWS_FT_FI2
Number of Residues	8
Details	BINDING: axial binding residue => ECO:0000269\|PubMed:11880631, ECO:0000269\|PubMed:18390544, ECO:0007744\|PDB:1KYO, ECO:0007744\|PDB:3CX5

Chain	Residue	Details
A	HIS18
A	MET80
B	HIS18
B	MET80
C	HIS18
C	MET80
D	HIS18
D	MET80

site_id	SWS_FT_FI3
Number of Residues	4
Details	MOD_RES: N6,N6,N6-trimethyllysine; by CTM1 => ECO:0000269\|PubMed:10791961, ECO:0000269\|PubMed:11880631, ECO:0007744\|PDB:1KYO

Chain	Residue	Details
A	LYS72
B	LYS72
C	LYS72
D	LYS72

site_id	SWS_FT_FI4
Number of Residues	4
Details	MOD_RES: N6,N6,N6-trimethyllysine => ECO:0000269\|PubMed:10821864, ECO:0000269\|PubMed:18390544

Chain	Residue	Details
A	LYS73
B	LYS73
C	LYS73
D	LYS73

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)