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6XRU

GTP-specific succinyl-CoA synthetase complexed with desulfo-coenzyme A, magnesium ions and succinates

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
B0003824molecular_functioncatalytic activity
B0004775molecular_functionsuccinate-CoA ligase (ADP-forming) activity
B0004776molecular_functionsuccinate-CoA ligase (GDP-forming) activity
B0005515molecular_functionprotein binding
B0005524molecular_functionATP binding
B0005525molecular_functionGTP binding
B0005737cellular_componentcytoplasm
B0005739cellular_componentmitochondrion
B0006099biological_processtricarboxylic acid cycle
B0006104biological_processsuccinyl-CoA metabolic process
B0016874molecular_functionligase activity
B0042709cellular_componentsuccinate-CoA ligase complex
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues36
Detailsbinding site for residue DCA A 401
ChainResidue
AGLY22
AVAL80
APRO81
APRO82
AILE103
ATHR104
AGLU105
AASN131
ACYS132
AILE145
AHOH505
ATHR24
AHOH518
AHOH522
AHOH525
AHOH535
AHOH542
AHOH552
AHOH555
AHOH567
AHOH576
AHOH633
AGLY25
AHOH639
AHOH647
AHOH648
AHOH658
AHOH716
BGLY298
BSIN401
ALYS26
AGLN27
ATHR46
APRO48
ALYS50
ATYR79

site_idAC2
Number of Residues10
Detailsbinding site for residue SIN A 402
ChainResidue
AARG256
AALA265
AGLY266
AHOH502
AHOH570
AHOH582
AHOH606
BTHR201
BASN224
BHOH725

site_idAC3
Number of Residues7
Detailsbinding site for residue GOL A 403
ChainResidue
AGLY139
AHIS151
ALYS152
ALYS153
AHOH506
AHOH508
BGLU74

site_idAC4
Number of Residues3
Detailsbinding site for residue GOL A 404
ChainResidue
ALEU249
ATHR250
BPHE284

site_idAC5
Number of Residues6
Detailsbinding site for residue EDO A 405
ChainResidue
ASER286
AMET287
ASER288
AGLN291
ATHR295
AHOH720

site_idAC6
Number of Residues13
Detailsbinding site for residue PO4 A 406
ChainResidue
ASER162
AGLY163
ATHR164
AHIS259
AHOH531
AHOH600
AHOH610
BGLY272
BALA273
BGLY274
BSIN401
BMG405
BHOH555

site_idAC7
Number of Residues13
Detailsbinding site for residue SIN B 401
ChainResidue
AILE145
AGLY163
ATYR167
ADCA401
APO4406
AHOH542
AHOH610
BASN271
BGLY328
BILE329
BVAL330
BMG405
BHOH555

site_idAC8
Number of Residues4
Detailsbinding site for residue GOL B 402
ChainResidue
BASP122
BARG123
BLYS153
BHOH612

site_idAC9
Number of Residues5
Detailsbinding site for residue GOL B 403
ChainResidue
BASN29
BGLY77
BGLN78
BHOH609
BHOH620

site_idAD1
Number of Residues6
Detailsbinding site for residue EDO B 404
ChainResidue
BGLN233
BLYS234
BASP235
BHOH728
BPHE231
BARG232

site_idAD2
Number of Residues6
Detailsbinding site for residue MG B 405
ChainResidue
APO4406
AHOH542
AHOH600
AHOH610
BSIN401
BHOH555

site_idAD3
Number of Residues6
Detailsbinding site for residue MG B 406
ChainResidue
AHOH826
BHOH576
BHOH580
BHOH618
BHOH627
BHOH725

Functional Information from PROSITE/UniProt
site_idPS00399
Number of Residues14
DetailsSUCCINYL_COA_LIG_2 ATP-citrate lyase / succinyl-CoA ligases family active site. GltAppgr...RMGHAG
ChainResidueDetails
AGLY248-GLY261

site_idPS01216
Number of Residues30
DetailsSUCCINYL_COA_LIG_1 ATP-citrate lyase / succinyl-CoA ligases family signature 1. SRSGTLTyEavhqttqvglGqslcVGIGGD
ChainResidueDetails
ASER160-ASP189

site_idPS01217
Number of Residues26
DetailsSUCCINYL_COA_LIG_3 ATP-citrate lyase / succinyl-CoA ligases family signature 3. GnIacFvNGAGLAmatcDiIflngGK
ChainResidueDetails
BGLY264-LYS289

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_03221, ECO:0000269|PubMed:16481318
ChainResidueDetails
BGLN20
BGLY53
BLEU109

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_03221, ECO:0000305|PubMed:16481318
ChainResidueDetails
BASN206
BASP220
AILE103

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_03221, ECO:0000269|PubMed:27487822
ChainResidueDetails
BASN271
BGLY328

site_idSWS_FT_FI4
Number of Residues2
DetailsSITE: Important for substrate specificity => ECO:0000255|HAMAP-Rule:MF_03221
ChainResidueDetails
BGLU42
BASP110

site_idSWS_FT_FI5
Number of Residues8
DetailsMOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:Q9Z2I8
ChainResidueDetails
BLYS36
BLYS95
BLYS102
BLYS163
BLYS234
BLYS310
BLYS349
BLYS386

site_idSWS_FT_FI6
Number of Residues2
DetailsMOD_RES: N6-succinyllysine => ECO:0000250|UniProtKB:Q9Z2I8
ChainResidueDetails
BLYS41
BLYS301

site_idSWS_FT_FI7
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:Q9Z2I8
ChainResidueDetails
BSER124

site_idSWS_FT_FI8
Number of Residues2
DetailsMOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:Q96I99
ChainResidueDetails
BLYS190
BLYS254

224201

PDB entries from 2024-08-28

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