6XK2
Crystal structure of Ribokinase from Cryptococcus neoformans var. grubii serotype A in complex with ADP
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004747 | molecular_function | ribokinase activity |
A | 0005524 | molecular_function | ATP binding |
A | 0005634 | cellular_component | nucleus |
A | 0005737 | cellular_component | cytoplasm |
A | 0006014 | biological_process | D-ribose metabolic process |
A | 0016301 | molecular_function | kinase activity |
A | 0016310 | biological_process | phosphorylation |
A | 0019303 | biological_process | D-ribose catabolic process |
A | 0046835 | biological_process | carbohydrate phosphorylation |
A | 0046872 | molecular_function | metal ion binding |
B | 0004747 | molecular_function | ribokinase activity |
B | 0005524 | molecular_function | ATP binding |
B | 0005634 | cellular_component | nucleus |
B | 0005737 | cellular_component | cytoplasm |
B | 0006014 | biological_process | D-ribose metabolic process |
B | 0016301 | molecular_function | kinase activity |
B | 0016310 | biological_process | phosphorylation |
B | 0019303 | biological_process | D-ribose catabolic process |
B | 0046835 | biological_process | carbohydrate phosphorylation |
B | 0046872 | molecular_function | metal ion binding |
C | 0004747 | molecular_function | ribokinase activity |
C | 0005524 | molecular_function | ATP binding |
C | 0005634 | cellular_component | nucleus |
C | 0005737 | cellular_component | cytoplasm |
C | 0006014 | biological_process | D-ribose metabolic process |
C | 0016301 | molecular_function | kinase activity |
C | 0016310 | biological_process | phosphorylation |
C | 0019303 | biological_process | D-ribose catabolic process |
C | 0046835 | biological_process | carbohydrate phosphorylation |
C | 0046872 | molecular_function | metal ion binding |
D | 0004747 | molecular_function | ribokinase activity |
D | 0005524 | molecular_function | ATP binding |
D | 0005634 | cellular_component | nucleus |
D | 0005737 | cellular_component | cytoplasm |
D | 0006014 | biological_process | D-ribose metabolic process |
D | 0016301 | molecular_function | kinase activity |
D | 0016310 | biological_process | phosphorylation |
D | 0019303 | biological_process | D-ribose catabolic process |
D | 0046835 | biological_process | carbohydrate phosphorylation |
D | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 13 |
Details | binding site for residue ADP A 401 |
Chain | Residue |
A | ASN187 |
A | LEU297 |
A | CYS300 |
A | HOH509 |
A | HOH514 |
A | THR238 |
A | LEU239 |
A | GLY240 |
A | ALA241 |
A | GLY243 |
A | ILE244 |
A | ALA271 |
A | GLY272 |
site_id | AC2 |
Number of Residues | 6 |
Details | binding site for residue EDO A 402 |
Chain | Residue |
A | ASN14 |
A | ASP16 |
A | GLY42 |
A | LYS43 |
A | GLU138 |
A | HOH516 |
site_id | AC3 |
Number of Residues | 1 |
Details | binding site for residue NA A 403 |
Chain | Residue |
A | GLU188 |
site_id | AC4 |
Number of Residues | 12 |
Details | binding site for residue ADP B 401 |
Chain | Residue |
B | ASN187 |
B | THR238 |
B | GLY240 |
B | ALA241 |
B | GLY243 |
B | ILE244 |
B | ALA271 |
B | GLY272 |
B | LEU297 |
B | CYS300 |
B | NA403 |
B | HOH511 |
site_id | AC5 |
Number of Residues | 6 |
Details | binding site for residue EDO B 402 |
Chain | Residue |
B | ASN14 |
B | ASP16 |
B | GLY42 |
B | LYS43 |
B | ALA96 |
B | GLU138 |
site_id | AC6 |
Number of Residues | 3 |
Details | binding site for residue NA B 403 |
Chain | Residue |
B | GLU188 |
B | GLY240 |
B | ADP401 |
site_id | AC7 |
Number of Residues | 9 |
Details | binding site for residue ADP C 400 |
Chain | Residue |
C | ASN187 |
C | THR238 |
C | GLY240 |
C | GLY243 |
C | ILE244 |
C | ALA271 |
C | GLY272 |
C | LEU297 |
C | CYS300 |
site_id | AC8 |
Number of Residues | 5 |
Details | binding site for residue EDO C 401 |
Chain | Residue |
C | ASN14 |
C | ASP16 |
C | GLY42 |
C | ASN46 |
C | ALA96 |
site_id | AC9 |
Number of Residues | 15 |
Details | binding site for residue ADP D 401 |
Chain | Residue |
D | ASN187 |
D | THR238 |
D | LEU239 |
D | GLY240 |
D | ALA241 |
D | GLY243 |
D | ILE244 |
D | ALA271 |
D | GLY272 |
D | LEU297 |
D | CYS300 |
D | NA402 |
D | HOH501 |
D | HOH505 |
D | HOH507 |
site_id | AD1 |
Number of Residues | 1 |
Details | binding site for residue NA D 402 |
Chain | Residue |
D | ADP401 |