6XK2
Crystal structure of Ribokinase from Cryptococcus neoformans var. grubii serotype A in complex with ADP
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0004747 | molecular_function | ribokinase activity |
| A | 0005524 | molecular_function | ATP binding |
| A | 0005634 | cellular_component | nucleus |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0006014 | biological_process | D-ribose metabolic process |
| A | 0006796 | biological_process | phosphate-containing compound metabolic process |
| A | 0016301 | molecular_function | kinase activity |
| A | 0019303 | biological_process | D-ribose catabolic process |
| A | 0046835 | biological_process | carbohydrate phosphorylation |
| B | 0004747 | molecular_function | ribokinase activity |
| B | 0005524 | molecular_function | ATP binding |
| B | 0005634 | cellular_component | nucleus |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0006014 | biological_process | D-ribose metabolic process |
| B | 0006796 | biological_process | phosphate-containing compound metabolic process |
| B | 0016301 | molecular_function | kinase activity |
| B | 0019303 | biological_process | D-ribose catabolic process |
| B | 0046835 | biological_process | carbohydrate phosphorylation |
| C | 0004747 | molecular_function | ribokinase activity |
| C | 0005524 | molecular_function | ATP binding |
| C | 0005634 | cellular_component | nucleus |
| C | 0005737 | cellular_component | cytoplasm |
| C | 0006014 | biological_process | D-ribose metabolic process |
| C | 0006796 | biological_process | phosphate-containing compound metabolic process |
| C | 0016301 | molecular_function | kinase activity |
| C | 0019303 | biological_process | D-ribose catabolic process |
| C | 0046835 | biological_process | carbohydrate phosphorylation |
| D | 0004747 | molecular_function | ribokinase activity |
| D | 0005524 | molecular_function | ATP binding |
| D | 0005634 | cellular_component | nucleus |
| D | 0005737 | cellular_component | cytoplasm |
| D | 0006014 | biological_process | D-ribose metabolic process |
| D | 0006796 | biological_process | phosphate-containing compound metabolic process |
| D | 0016301 | molecular_function | kinase activity |
| D | 0019303 | biological_process | D-ribose catabolic process |
| D | 0046835 | biological_process | carbohydrate phosphorylation |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 13 |
| Details | binding site for residue ADP A 401 |
| Chain | Residue |
| A | ASN187 |
| A | LEU297 |
| A | CYS300 |
| A | HOH509 |
| A | HOH514 |
| A | THR238 |
| A | LEU239 |
| A | GLY240 |
| A | ALA241 |
| A | GLY243 |
| A | ILE244 |
| A | ALA271 |
| A | GLY272 |
| site_id | AC2 |
| Number of Residues | 6 |
| Details | binding site for residue EDO A 402 |
| Chain | Residue |
| A | ASN14 |
| A | ASP16 |
| A | GLY42 |
| A | LYS43 |
| A | GLU138 |
| A | HOH516 |
| site_id | AC3 |
| Number of Residues | 1 |
| Details | binding site for residue NA A 403 |
| Chain | Residue |
| A | GLU188 |
| site_id | AC4 |
| Number of Residues | 12 |
| Details | binding site for residue ADP B 401 |
| Chain | Residue |
| B | ASN187 |
| B | THR238 |
| B | GLY240 |
| B | ALA241 |
| B | GLY243 |
| B | ILE244 |
| B | ALA271 |
| B | GLY272 |
| B | LEU297 |
| B | CYS300 |
| B | NA403 |
| B | HOH511 |
| site_id | AC5 |
| Number of Residues | 6 |
| Details | binding site for residue EDO B 402 |
| Chain | Residue |
| B | ASN14 |
| B | ASP16 |
| B | GLY42 |
| B | LYS43 |
| B | ALA96 |
| B | GLU138 |
| site_id | AC6 |
| Number of Residues | 3 |
| Details | binding site for residue NA B 403 |
| Chain | Residue |
| B | GLU188 |
| B | GLY240 |
| B | ADP401 |
| site_id | AC7 |
| Number of Residues | 9 |
| Details | binding site for residue ADP C 400 |
| Chain | Residue |
| C | ASN187 |
| C | THR238 |
| C | GLY240 |
| C | GLY243 |
| C | ILE244 |
| C | ALA271 |
| C | GLY272 |
| C | LEU297 |
| C | CYS300 |
| site_id | AC8 |
| Number of Residues | 5 |
| Details | binding site for residue EDO C 401 |
| Chain | Residue |
| C | ASN14 |
| C | ASP16 |
| C | GLY42 |
| C | ASN46 |
| C | ALA96 |
| site_id | AC9 |
| Number of Residues | 15 |
| Details | binding site for residue ADP D 401 |
| Chain | Residue |
| D | ASN187 |
| D | THR238 |
| D | LEU239 |
| D | GLY240 |
| D | ALA241 |
| D | GLY243 |
| D | ILE244 |
| D | ALA271 |
| D | GLY272 |
| D | LEU297 |
| D | CYS300 |
| D | NA402 |
| D | HOH501 |
| D | HOH505 |
| D | HOH507 |
| site_id | AD1 |
| Number of Residues | 1 |
| Details | binding site for residue NA D 402 |
| Chain | Residue |
| D | ADP401 |
