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6X9K

Human DNMT1(729-1600) Bound to Zebularine-Containing 12mer dsDNA and Inhibitor GSK3685032A

Functional Information from GO Data
ChainGOidnamespacecontents
A0003682molecular_functionchromatin binding
A0008168molecular_functionmethyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 1701
ChainResidue
ACYS1476
ACYS1478
ACYS1485
AHIS1502

site_idAC2
Number of Residues4
Detailsbinding site for residue ZN A 1702
ChainResidue
AHIS793
ACYS820
ACYS893
ACYS896

site_idAC3
Number of Residues4
Detailsbinding site for residue EDO A 1703
ChainResidue
ATRP1395
APHE1396
AGLN1399
AGLY1305

site_idAC4
Number of Residues5
Detailsbinding site for residue EDO A 1704
ChainResidue
AASP810
AGLU813
AARG1285
AARG1289
AEDO1705

site_idAC5
Number of Residues6
Detailsbinding site for residue EDO A 1705
ChainResidue
AASP810
ALYS837
APHE864
AGLN866
AARG1289
AEDO1704

site_idAC6
Number of Residues2
Detailsbinding site for residue EDO A 1706
ChainResidue
AALA1033
AHIS1036

site_idAC7
Number of Residues6
Detailsbinding site for residue EDO A 1707
ChainResidue
AILE931
AGLY1058
AARG1059
AASN1081
AARG1356
AHOH1864

site_idAC8
Number of Residues4
Detailsbinding site for residue EDO A 1708
ChainResidue
AGLY1380
AALA1381
ASER1382
ACYS1414

site_idAC9
Number of Residues7
Detailsbinding site for residue EDO A 1709
ChainResidue
APRO988
AGLN1303
AHIS1332
AVAL1333
APHE1334
ALEU1357
ASER1359

site_idAD1
Number of Residues5
Detailsbinding site for residue EDO A 1710
ChainResidue
APRO1225
ACYS1226
AGLN1227
ASER1246
ALEU1247

site_idAD2
Number of Residues5
Detailsbinding site for residue EDO A 1711
ChainResidue
AGLY1215
AVAL1217
ATYR1258
AARG1259
AHOH1812

site_idAD3
Number of Residues8
Detailsbinding site for residue UXM C 101
ChainResidue
AHIS1507
ATRP1510
ALYS1535
C5CM6
CDG7
DPYO18
DDG19
DDG20

Functional Information from PROSITE/UniProt
site_idPS00094
Number of Residues13
DetailsC5_MTASE_1 C-5 cytosine-specific DNA methylases active site. EmLcgGpPCqGFS
ChainResidueDetails
AGLU1218-SER1230

site_idPS00095
Number of Residues19
DetailsC5_MTASE_2 C-5 cytosine-specific DNA methylases C-terminal signature. RqvGNAVpPpLakaIgleI
ChainResidueDetails
AARG1574-ILE1592

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues125
DetailsDomain: {"description":"BAH 1","evidences":[{"source":"PROSITE-ProRule","id":"PRU00370","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues128
DetailsDomain: {"description":"BAH 2","evidences":[{"source":"PROSITE-ProRule","id":"PRU00370","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues460
DetailsDomain: {"description":"SAM-dependent MTase C5-type","evidences":[{"source":"PROSITE-ProRule","id":"PRU01016","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues1
DetailsActive site: {}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"UniProtKB","id":"P13864","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues3
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"21163962","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"3PTA","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues1
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"18220336","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI8
Number of Residues8
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"21947282","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI9
Number of Residues1
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"23186163","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

248335

PDB entries from 2026-01-28

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