6X1E
Tubulin-RB3_SLD-TTL in complex with compound 5l
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000226 | biological_process | microtubule cytoskeleton organization |
A | 0000278 | biological_process | mitotic cell cycle |
A | 0003924 | molecular_function | GTPase activity |
A | 0005200 | molecular_function | structural constituent of cytoskeleton |
A | 0005525 | molecular_function | GTP binding |
A | 0005737 | cellular_component | cytoplasm |
A | 0005856 | cellular_component | cytoskeleton |
A | 0005874 | cellular_component | microtubule |
A | 0007017 | biological_process | microtubule-based process |
A | 0015630 | cellular_component | microtubule cytoskeleton |
A | 0016787 | molecular_function | hydrolase activity |
A | 0046872 | molecular_function | metal ion binding |
B | 0000226 | biological_process | microtubule cytoskeleton organization |
B | 0000278 | biological_process | mitotic cell cycle |
B | 0003924 | molecular_function | GTPase activity |
B | 0005200 | molecular_function | structural constituent of cytoskeleton |
B | 0005515 | molecular_function | protein binding |
B | 0005525 | molecular_function | GTP binding |
B | 0005737 | cellular_component | cytoplasm |
B | 0005856 | cellular_component | cytoskeleton |
B | 0005874 | cellular_component | microtubule |
B | 0007017 | biological_process | microtubule-based process |
B | 0046872 | molecular_function | metal ion binding |
C | 0000226 | biological_process | microtubule cytoskeleton organization |
C | 0000278 | biological_process | mitotic cell cycle |
C | 0003924 | molecular_function | GTPase activity |
C | 0005200 | molecular_function | structural constituent of cytoskeleton |
C | 0005525 | molecular_function | GTP binding |
C | 0005737 | cellular_component | cytoplasm |
C | 0005856 | cellular_component | cytoskeleton |
C | 0005874 | cellular_component | microtubule |
C | 0007017 | biological_process | microtubule-based process |
C | 0015630 | cellular_component | microtubule cytoskeleton |
C | 0016787 | molecular_function | hydrolase activity |
C | 0046872 | molecular_function | metal ion binding |
D | 0000226 | biological_process | microtubule cytoskeleton organization |
D | 0000278 | biological_process | mitotic cell cycle |
D | 0003924 | molecular_function | GTPase activity |
D | 0005200 | molecular_function | structural constituent of cytoskeleton |
D | 0005515 | molecular_function | protein binding |
D | 0005525 | molecular_function | GTP binding |
D | 0005737 | cellular_component | cytoplasm |
D | 0005856 | cellular_component | cytoskeleton |
D | 0005874 | cellular_component | microtubule |
D | 0007017 | biological_process | microtubule-based process |
D | 0046872 | molecular_function | metal ion binding |
E | 0031110 | biological_process | regulation of microtubule polymerization or depolymerization |
F | 0036211 | biological_process | protein modification process |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 22 |
Details | binding site for residue GTP A 501 |
Chain | Residue |
A | GLY10 |
A | GLY144 |
A | THR145 |
A | GLY146 |
A | VAL177 |
A | SER178 |
A | GLU183 |
A | ASN206 |
A | TYR224 |
A | ASN228 |
A | ILE231 |
A | GLN11 |
A | MG503 |
A | HOH602 |
A | HOH603 |
A | ALA12 |
A | GLN15 |
A | ASP98 |
A | ALA99 |
A | ASN101 |
A | SER140 |
A | GLY143 |
site_id | AC2 |
Number of Residues | 4 |
Details | binding site for residue CA A 502 |
Chain | Residue |
A | ASP39 |
A | THR41 |
A | GLY44 |
A | GLU55 |
site_id | AC3 |
Number of Residues | 6 |
Details | binding site for residue MG A 503 |
Chain | Residue |
A | GLU71 |
A | GTP501 |
A | HOH602 |
A | HOH603 |
A | HOH604 |
A | HOH616 |
site_id | AC4 |
Number of Residues | 18 |
Details | binding site for residue GDP B 501 |
Chain | Residue |
B | GLY10 |
B | GLN11 |
B | CYS12 |
B | GLN15 |
B | SER138 |
B | GLY141 |
B | GLY142 |
B | THR143 |
B | GLY144 |
B | VAL175 |
B | ASP177 |
B | GLU181 |
B | ASN204 |
B | TYR222 |
B | ASN226 |
B | MG504 |
B | HOH607 |
B | HOH613 |
site_id | AC5 |
Number of Residues | 7 |
Details | binding site for residue MES B 502 |
Chain | Residue |
B | ARG156 |
B | PRO160 |
B | ASP161 |
B | ARG162 |
B | ASN195 |
B | ASP197 |
B | ARG251 |
site_id | AC6 |
Number of Residues | 5 |
Details | binding site for residue MES B 503 |
Chain | Residue |
B | PHE294 |
B | ASP295 |
B | SER296 |
B | ARG306 |
B | ASN337 |
site_id | AC7 |
Number of Residues | 7 |
Details | binding site for residue MG B 504 |
Chain | Residue |
B | GLN11 |
B | ASP177 |
B | GDP501 |
B | HOH601 |
B | HOH605 |
B | HOH622 |
B | HOH625 |
site_id | AC8 |
Number of Residues | 16 |
Details | binding site for residue Y5L B 505 |
Chain | Residue |
A | THR179 |
B | CYS239 |
B | LEU240 |
B | LEU246 |
B | ALA248 |
B | LEU253 |
B | ASN256 |
B | MET257 |
B | THR312 |
B | VAL313 |
B | ALA314 |
B | ALA315 |
B | ILE316 |
B | ASN348 |
B | LYS350 |
B | HOH620 |
site_id | AC9 |
Number of Residues | 23 |
Details | binding site for residue GTP C 501 |
Chain | Residue |
C | GLU183 |
C | ASN206 |
C | TYR224 |
C | ASN228 |
C | ILE231 |
C | MG503 |
C | HOH601 |
C | HOH602 |
C | HOH611 |
C | GLY10 |
C | GLN11 |
C | ALA12 |
C | GLN15 |
C | ASP98 |
C | ALA99 |
C | ALA100 |
C | ASN101 |
C | SER140 |
C | GLY143 |
C | GLY144 |
C | THR145 |
C | GLY146 |
C | VAL177 |
site_id | AD1 |
Number of Residues | 5 |
Details | binding site for residue CA C 502 |
Chain | Residue |
C | ASP39 |
C | THR41 |
C | GLY44 |
C | GLU55 |
C | HOH605 |
site_id | AD2 |
Number of Residues | 6 |
Details | binding site for residue MG C 503 |
Chain | Residue |
C | GLU71 |
C | GTP501 |
C | HOH601 |
C | HOH602 |
C | HOH611 |
C | HOH629 |
site_id | AD3 |
Number of Residues | 20 |
Details | binding site for residue GTP D 501 |
Chain | Residue |
D | GLY10 |
D | GLN11 |
D | CYS12 |
D | GLN15 |
D | ALA97 |
D | GLY98 |
D | ASN99 |
D | SER138 |
D | GLY141 |
D | GLY142 |
D | THR143 |
D | GLY144 |
D | VAL175 |
D | SER176 |
D | GLU181 |
D | ASN204 |
D | TYR222 |
D | ASN226 |
D | MG502 |
D | HOH601 |
site_id | AD4 |
Number of Residues | 2 |
Details | binding site for residue MG D 502 |
Chain | Residue |
D | GLN11 |
D | GTP501 |
site_id | AD5 |
Number of Residues | 12 |
Details | binding site for residue Y5L D 503 |
Chain | Residue |
C | THR179 |
D | CYS239 |
D | LEU240 |
D | ALA248 |
D | LYS252 |
D | LEU253 |
D | ASN256 |
D | MET257 |
D | ALA315 |
D | ILE316 |
D | ASN348 |
D | LYS350 |
site_id | AD6 |
Number of Residues | 3 |
Details | binding site for residue MG F 401 |
Chain | Residue |
F | GLU331 |
F | ASN333 |
F | ACP402 |
site_id | AD7 |
Number of Residues | 16 |
Details | binding site for residue ACP F 402 |
Chain | Residue |
F | LYS74 |
F | LYS150 |
F | GLN183 |
F | LYS184 |
F | TYR185 |
F | LEU186 |
F | ASP200 |
F | ARG202 |
F | ARG222 |
F | HIS239 |
F | THR241 |
F | ASN242 |
F | ASP318 |
F | GLU331 |
F | ASN333 |
F | MG401 |
Functional Information from PROSITE/UniProt
site_id | PS00227 |
Number of Residues | 7 |
Details | TUBULIN Tubulin subunits alpha, beta, and gamma signature. GGGTGSG |
Chain | Residue | Details |
A | GLY142-GLY148 | |
B | GLY140-GLY146 |
site_id | PS00228 |
Number of Residues | 4 |
Details | TUBULIN_B_AUTOREG Tubulin-beta mRNA autoregulation signal. MREI |
Chain | Residue | Details |
B | MET1-ILE4 |
site_id | PS00563 |
Number of Residues | 10 |
Details | STATHMIN_1 Stathmin family signature 1. PRRRDpSLEE |
Chain | Residue | Details |
E | PRO40-GLU49 |
site_id | PS01041 |
Number of Residues | 10 |
Details | STATHMIN_2 Stathmin family signature 2. AEKREHEREV |
Chain | Residue | Details |
E | ALA73-VAL82 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 14 |
Details | BINDING: BINDING => ECO:0000250|UniProtKB:Q13509 |
Chain | Residue | Details |
B | GLN11 | |
D | GLY142 | |
D | THR143 | |
D | GLY144 | |
D | ASN204 | |
D | ASN226 | |
B | SER138 | |
B | GLY142 | |
B | THR143 | |
B | GLY144 | |
B | ASN204 | |
B | ASN226 | |
D | GLN11 | |
D | SER138 |
site_id | SWS_FT_FI2 |
Number of Residues | 2 |
Details | BINDING: BINDING => ECO:0000250|UniProtKB:P68363 |
Chain | Residue | Details |
B | GLU69 | |
C | GLU71 | |
C | SER140 | |
C | GLY144 | |
C | THR145 | |
C | THR179 | |
C | ASN206 | |
C | ASN228 | |
D | GLU69 | |
A | SER140 | |
A | GLY144 | |
A | THR145 | |
A | THR179 | |
A | ASN206 | |
A | ASN228 | |
C | GLN11 |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | MOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P99024 |
Chain | Residue | Details |
B | SER40 | |
D | SER40 |
site_id | SWS_FT_FI4 |
Number of Residues | 2 |
Details | MOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P99024 |
Chain | Residue | Details |
B | LYS58 | |
D | LYS58 | |
C | SER48 | |
C | SER232 |
site_id | SWS_FT_FI5 |
Number of Residues | 2 |
Details | MOD_RES: Phosphoserine; by CDK1 => ECO:0000250|UniProtKB:Q13885 |
Chain | Residue | Details |
B | SER172 | |
D | SER172 |
site_id | SWS_FT_FI6 |
Number of Residues | 4 |
Details | MOD_RES: Phosphothreonine => ECO:0000250|UniProtKB:P07437 |
Chain | Residue | Details |
B | THR285 | |
B | THR290 | |
D | THR285 | |
D | THR290 |
site_id | SWS_FT_FI7 |
Number of Residues | 2 |
Details | MOD_RES: Omega-N-methylarginine => ECO:0000250|UniProtKB:P07437 |
Chain | Residue | Details |
B | ARG318 | |
D | ARG318 |
site_id | SWS_FT_FI8 |
Number of Residues | 2 |
Details | MOD_RES: 5-glutamyl polyglutamate => ECO:0000250|UniProtKB:Q2T9S0 |
Chain | Residue | Details |
B | GLU438 | |
D | GLU438 |
site_id | SWS_FT_FI9 |
Number of Residues | 2 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate => ECO:0000250|UniProtKB:P07437 |
Chain | Residue | Details |
B | LYS58 | |
D | LYS58 |
site_id | SWS_FT_FI10 |
Number of Residues | 4 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P07437 |
Chain | Residue | Details |
A | LYS326 | |
B | LYS324 | |
A | LYS370 | |
D | LYS324 | |
C | LYS370 |