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6WYQ

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 1 (CD1) K330L mutant complexed with 4-iodo-SAHA

Functional Information from GO Data
ChainGOidnamespacecontents
A0000118cellular_componenthistone deacetylase complex
A0004407molecular_functionhistone deacetylase activity
A0006325biological_processchromatin organization
A0016575biological_processhistone deacetylation
B0000118cellular_componenthistone deacetylase complex
B0004407molecular_functionhistone deacetylase activity
B0006325biological_processchromatin organization
B0016575biological_processhistone deacetylation
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 501
ChainResidue
AASP230
AHIS232
AASP323
AUFJ504

site_idAC2
Number of Residues5
Detailsbinding site for residue K A 502
ChainResidue
AASP228
AASP230
AHIS232
ASER251
AVAL252

site_idAC3
Number of Residues6
Detailsbinding site for residue K A 503
ChainResidue
APHE241
AASP244
AVAL247
ATYR280
AHOH629
AHOH674

site_idAC4
Number of Residues17
Detailsbinding site for residue UFJ A 504
ChainResidue
AASP79
APRO83
ASER150
AHIS192
AHIS193
AGLY201
APHE202
AASP230
AHIS232
AASP323
ATYR363
AZN501
AHOH613
BASP257
BGLY258
BSER259
BHIS263

site_idAC5
Number of Residues4
Detailsbinding site for residue ZN B 501
ChainResidue
BASP230
BHIS232
BASP323
BUFJ504

site_idAC6
Number of Residues5
Detailsbinding site for residue K B 502
ChainResidue
BASP228
BASP230
BHIS232
BSER251
BVAL252

site_idAC7
Number of Residues6
Detailsbinding site for residue K B 503
ChainResidue
BPHE241
BASP244
BVAL247
BTYR280
BHOH668
BHOH679

site_idAC8
Number of Residues19
Detailsbinding site for residue UFJ B 504
ChainResidue
AASP257
AGLY258
ASER259
AHIS263
BPRO83
BSER150
BHIS192
BHIS193
BGLY201
BPHE202
BASP230
BHIS232
BTRP261
BASP323
BLEU330
BTYR363
BZN501
BHOH684
BHOH692

224572

PDB entries from 2024-09-04

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