6WVF
E.coli DsbB C104S with ubiquinone
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005515 | molecular_function | protein binding |
| A | 0005886 | cellular_component | plasma membrane |
| A | 0006091 | biological_process | generation of precursor metabolites and energy |
| A | 0006457 | biological_process | protein folding |
| A | 0008218 | biological_process | bioluminescence |
| A | 0009055 | molecular_function | electron transfer activity |
| A | 0009408 | biological_process | response to heat |
| A | 0015035 | molecular_function | protein-disulfide reductase activity |
| A | 0016020 | cellular_component | membrane |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0016672 | molecular_function | oxidoreductase activity, acting on a sulfur group of donors, quinone or similar compound as acceptor |
| A | 0048039 | molecular_function | ubiquinone binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 10 |
| Details | binding site for residue UQ1 A 501 |
| Chain | Residue |
| A | ALA168 |
| A | PHE289 |
| A | PHE171 |
| A | LEU177 |
| A | PRO179 |
| A | CYS183 |
| A | GLU186 |
| A | ARG187 |
| A | LEU190 |
| A | LEU285 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 51 |
| Details | Transmembrane: {"description":"Helical","evidences":[{"evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 71 |
| Details | Topological domain: {"description":"Periplasmic","evidences":[{"evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 5 |
| Details | Topological domain: {"description":"Cytoplasmic","evidences":[{"evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 1 |
| Details | Modified residue: {"description":"(Z)-2,3-didehydrotyrosine","evidences":[{"source":"PubMed","id":"8448132","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 2 |
| Details | Cross-link: {"description":"5-imidazolinone (Ser-Gly)","evidences":[{"source":"PubMed","id":"8448132","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
Catalytic Information from CSA
| site_id | MCSA1 |
| Number of Residues | 5 |
| Details | M-CSA 734 |
| Chain | Residue | Details |
| A | ILE184 | electrofuge, electrophile, nucleofuge, nucleophile |
| A | ARG187 | electrofuge, electrophile, nucleofuge, nucleophile |
| A | PHE191 | electrostatic stabiliser |
| A | VAL247 | covalently attached, nucleofuge, nucleophile |
| A | GLN273 | electrofuge, electrophile, nucleophile |
