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6WUG

Crystal Structure of S. pombe Rai1 in complex with 3'-FADP

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0000448biological_processcleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
A0000956biological_processnuclear-transcribed mRNA catabolic process
A0003723molecular_functionRNA binding
A0004518molecular_functionnuclease activity
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005829cellular_componentcytosol
A0006397biological_processmRNA processing
A0019003molecular_functionGDP binding
A0034353molecular_functionmRNA 5'-diphosphatase activity
A0046872molecular_functionmetal ion binding
A0090730cellular_componentLas1 complex
A0110152molecular_functionRNA NAD+-cap (NAD+-forming) hydrolase activity
A0110155biological_processNAD-cap decapping
A0140432molecular_function5'-hydroxyl dinucleotide hydrolase activity
A1990174molecular_functionphosphodiesterase decapping endonuclease activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue MG A 401
ChainResidue
AGLU150
AASP201
AGLU239
ALEU240
AUBG403
AHOH546

site_idAC2
Number of Residues6
Detailsbinding site for residue MG A 402
ChainResidue
AHOH565
AHOH567
AHOH584
AGLU199
AHOH515
AHOH550

site_idAC3
Number of Residues33
Detailsbinding site for residue UBG A 403
ChainResidue
APRO65
ALYS66
ASER67
AASP68
APRO69
AASP70
ATRP93
AARG94
AGLY95
AGLU128
ATHR130
AASN138
ATYR147
AGLN180
AALA197
AGLY198
AGLU199
AGLU239
ALYS241
AGLN263
AMG401
AHOH506
AHOH510
AHOH511
AHOH546
AHOH551
AHOH557
AHOH571
AHOH583
AHOH584
AHOH602
AHOH610
AHOH629

site_idAC4
Number of Residues4
Detailsbinding site for residue EDO A 404
ChainResidue
APHE265
AILE269
AHIS292
AHOH530

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:O70348
ChainResidueDetails
AARG33
ATRP93
ACSS182
AGLU199
ALYS241
AGLN263

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:19194460
ChainResidueDetails
AGLU150
AASP201
AGLU239
ALEU240

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0000269|PubMed:18257517
ChainResidueDetails
ASER218

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PDB entries from 2024-07-10

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