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6WUF

Crystal structure of mouse DXO in complex with 3'-FADP

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0000287molecular_functionmagnesium ion binding
A0000956biological_processnuclear-transcribed mRNA catabolic process
A0003723molecular_functionRNA binding
A0003729molecular_functionmRNA binding
A0004527molecular_functionexonuclease activity
A0005634cellular_componentnucleus
A0005829cellular_componentcytosol
A0006402biological_processmRNA catabolic process
A0008409molecular_function5'-3' exonuclease activity
A0034353molecular_functionmRNA 5'-diphosphatase activity
A0046872molecular_functionmetal ion binding
A0050779biological_processRNA destabilization
A0071028biological_processnuclear mRNA surveillance
A0090304biological_processnucleic acid metabolic process
A0110152molecular_functionRNA NAD+-cap (NAD+-forming) hydrolase activity
A0110155biological_processNAD-cap decapping
Functional Information from PDB Data
site_idAC1
Number of Residues27
Detailsbinding site for residue UBG A 401
ChainResidue
AARG95
AGLY233
AGLN234
ALYS255
AGLN280
AHOH505
AHOH515
AHOH530
AHOH535
AHOH562
AHOH568
AGLU97
AHOH570
AHOH582
AHOH588
AHOH596
AHOH633
AHOH655
AHOH669
AHOH725
ATRP131
AARG132
AGLY133
AHIS134
AGLU166
AARG174
ATYR189

site_idAC2
Number of Residues4
Detailsbinding site for residue EDO A 402
ChainResidue
ATYR70
AHIS288
ATHR305
AHOH545

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues5
DetailsBINDING: BINDING => ECO:0000269|PubMed:23523372, ECO:0000269|PubMed:28283058
ChainResidueDetails
ATRP131
AGLN234
ALYS255
AGLN280
AARG58

site_idSWS_FT_FI2
Number of Residues3
DetailsBINDING: BINDING => ECO:0000269|PubMed:23523372
ChainResidueDetails
ACYS217
ASER192
AGLU101

site_idSWS_FT_FI3
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:30180947
ChainResidueDetails
AMET185

site_idSWS_FT_FI4
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:23523372, ECO:0000269|PubMed:30180947
ChainResidueDetails
AASP236

site_idSWS_FT_FI5
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:23523372, ECO:0000269|PubMed:30180947, ECO:0000305|PubMed:28283058
ChainResidueDetails
ALEU254
AGLN253

site_idSWS_FT_FI6
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0000250|UniProtKB:Q6MG77
ChainResidueDetails
ATHR392

site_idSWS_FT_FI7
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:21183079
ChainResidueDetails
ASER394

221051

PDB entries from 2024-06-12

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