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6WQ3

Crystal Structure of Nsp16-Nsp10 Heterodimer from SARS-CoV-2 in Complex with 7-methyl-GpppA and S-adenosyl-L-homocysteine.

Functional Information from GO Data
ChainGOidnamespacecontents
A0004483molecular_functionmethyltransferase cap1 activity
B0003723molecular_functionRNA binding
B0008270molecular_functionzinc ion binding
B0019079biological_processviral genome replication
Functional Information from PDB Data
site_idAC1
Number of Residues20
Detailsbinding site for residue SAH A 7101
ChainResidue
AASN6841
AASP6912
ACYS6913
AASP6928
AMET6929
ATYR6930
AGTA7102
ASO47109
AHOH7233
AHOH7248
AHOH7337
ATYR6845
AHOH7347
AGLY6869
AGLY6871
APRO6878
AGLY6879
AASP6897
ALEU6898
AASN6899

site_idAC2
Number of Residues23
Detailsbinding site for residue GTA A 7102
ChainResidue
ACYS6823
AASP6824
ALEU6825
ATYR6828
ALYS6844
ATYR6930
ALYS6935
ALYS6968
ATHR6970
AGLU6971
AHIS6972
AASN6996
ASER6999
ASER7000
AGLU7001
ASAH7101
ASO47109
AHOH7211
AHOH7226
AHOH7227
AHOH7229
AHOH7258
AHOH7282

site_idAC3
Number of Residues7
Detailsbinding site for residue M7G A 7103
ChainResidue
ALEU6855
ATHR6856
ATRP6987
ASER7074
AHOH7230
AHOH7326
BTHR4302

site_idAC4
Number of Residues5
Detailsbinding site for residue SO4 A 7104
ChainResidue
AMET6839
AMET6840
ALYS6874
AHOH7203
AHOH7205

site_idAC5
Number of Residues3
Detailsbinding site for residue SO4 A 7105
ChainResidue
AHIS6917
ATHR6918
ALYS6958

site_idAC6
Number of Residues7
Detailsbinding site for residue SO4 A 7106
ChainResidue
AARG6864
AASN6920
ALYS6921
AARG7081
AGLU7082
AASN7083
AASN7084

site_idAC7
Number of Residues6
Detailsbinding site for residue SO4 A 7107
ChainResidue
ALYS6836
AGLY6837
AHOH7204
BLYS4296
BASN4358
BHOH4506

site_idAC8
Number of Residues4
Detailsbinding site for residue SO4 A 7108
ChainResidue
ALYS6836
AGLY6837
AHOH7204
AHOH7342

site_idAC9
Number of Residues7
Detailsbinding site for residue SO4 A 7109
ChainResidue
AASN6841
ASER6872
AASP6873
ASAH7101
AGTA7102
AHOH7211
AHOH7268

site_idAD1
Number of Residues4
Detailsbinding site for residue ZN B 4401
ChainResidue
BCYS4327
BCYS4330
BHIS4336
BCYS4343

site_idAD2
Number of Residues4
Detailsbinding site for residue ZN B 4402
ChainResidue
BCYS4370
BCYS4373
BCYS4381
BCYS4383

site_idAD3
Number of Residues6
Detailsbinding site for residue SO4 B 4403
ChainResidue
BTHR4300
BTHR4302
BGLY4303
BHOH4513
BHOH4518
BHOH4521

site_idAD4
Number of Residues3
Detailsbinding site for residue SO4 B 4404
ChainResidue
BGLN4306
BTHR4309
BVAL4310

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues294
DetailsDomain: {"description":"Nidovirus-type SAM-dependent 2'-O-MTase","evidences":[{"source":"PROSITE-ProRule","id":"PRU01300","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues24
DetailsRepeat: {"description":"LRR 9","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues4
DetailsActive site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU01300","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues8
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU01297","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

249697

PDB entries from 2026-02-25

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