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6WO9

Diphosphoinositol polyphosphate phosphohydrolase 1 (DIPP1/NUDT3) in complex with 1-diphosphoinositol pentakisphosphate (1-IP7) and Mg

Functional Information from GO Data
ChainGOidnamespacecontents
A0016462molecular_functionpyrophosphatase activity
A0016787molecular_functionhydrolase activity
Functional Information from PDB Data
site_idAC1
Number of Residues23
Detailsbinding site for residue O81 A 401
ChainResidue
AARG10
AGLY52
AGLU66
AGLU70
AARG89
AHIS91
AARG115
ALYS133
AMG402
AMG403
AMG404
ALYS18
AHOH528
AHOH538
AHOH540
AHOH554
AARG20
ASER39
ASER40
AARG41
AILE47
AGLY50
AGLY51

site_idAC2
Number of Residues6
Detailsbinding site for residue MG A 402
ChainResidue
AGLY50
AGLY51
AGLU70
AO81401
AMG403
AHOH540

site_idAC3
Number of Residues7
Detailsbinding site for residue MG A 403
ChainResidue
AGLU66
AGLU70
AO81401
AMG402
AMG404
AHOH554
AHOH571

site_idAC4
Number of Residues5
Detailsbinding site for residue MG A 404
ChainResidue
AGLU66
AO81401
AMG403
AHOH530
AHOH535

site_idAC5
Number of Residues6
Detailsbinding site for residue CL A 405
ChainResidue
ASER28
ASER30
AGLU31
AGLU32
AGLU33
AHOH559

site_idAC6
Number of Residues9
Detailsbinding site for residue SO4 A 406
ChainResidue
AARG20
AASN86
AHIS91
AGLN136
ATYR139
AHOH501
AHOH502
AHOH525
AHOH544

Functional Information from PROSITE/UniProt
site_idPS00893
Number of Residues22
DetailsNUDIX_BOX Nudix box signature. GgmepeEepsvAAvREVcEEaG
ChainResidueDetails
AGLY51-GLY72

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Proton acceptor => ECO:0000305
ChainResidueDetails
AGLU69

site_idSWS_FT_FI2
Number of Residues5
DetailsBINDING: BINDING => ECO:0000269|PubMed:19585659, ECO:0007744|PDB:2FVV, ECO:0007744|PDB:2Q9P
ChainResidueDetails
AARG10
ALYS18
ASER39
AARG89
ALYS133

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:19585659, ECO:0007744|PDB:2Q9P
ChainResidueDetails
AGLY50
AGLU66
AGLU70
AARG115

site_idSWS_FT_FI4
Number of Residues1
DetailsMOD_RES: N-acetylmethionine => ECO:0007744|PubMed:22814378
ChainResidueDetails
AMET1

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PDB entries from 2024-05-01

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