Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

6WKV

Cryo-EM structure of engineered variant of the Encapsulin from Thermotoga maritima (TmE)

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
0	0140737	cellular_component	encapsulin nanocompartment
1	0140737	cellular_component	encapsulin nanocompartment
2	0140737	cellular_component	encapsulin nanocompartment
3	0140737	cellular_component	encapsulin nanocompartment
4	0140737	cellular_component	encapsulin nanocompartment
5	0140737	cellular_component	encapsulin nanocompartment
6	0140737	cellular_component	encapsulin nanocompartment
7	0140737	cellular_component	encapsulin nanocompartment
8	0140737	cellular_component	encapsulin nanocompartment
9	0140737	cellular_component	encapsulin nanocompartment
a	0140737	cellular_component	encapsulin nanocompartment
A	0140737	cellular_component	encapsulin nanocompartment
b	0140737	cellular_component	encapsulin nanocompartment
B	0140737	cellular_component	encapsulin nanocompartment
c	0140737	cellular_component	encapsulin nanocompartment
C	0140737	cellular_component	encapsulin nanocompartment
d	0140737	cellular_component	encapsulin nanocompartment
D	0140737	cellular_component	encapsulin nanocompartment
e	0140737	cellular_component	encapsulin nanocompartment
E	0140737	cellular_component	encapsulin nanocompartment
f	0140737	cellular_component	encapsulin nanocompartment
F	0140737	cellular_component	encapsulin nanocompartment
g	0140737	cellular_component	encapsulin nanocompartment
G	0140737	cellular_component	encapsulin nanocompartment
h	0140737	cellular_component	encapsulin nanocompartment
H	0140737	cellular_component	encapsulin nanocompartment
i	0140737	cellular_component	encapsulin nanocompartment
I	0140737	cellular_component	encapsulin nanocompartment
j	0140737	cellular_component	encapsulin nanocompartment
J	0140737	cellular_component	encapsulin nanocompartment
k	0140737	cellular_component	encapsulin nanocompartment
K	0140737	cellular_component	encapsulin nanocompartment
l	0140737	cellular_component	encapsulin nanocompartment
L	0140737	cellular_component	encapsulin nanocompartment
m	0140737	cellular_component	encapsulin nanocompartment
M	0140737	cellular_component	encapsulin nanocompartment
n	0140737	cellular_component	encapsulin nanocompartment
N	0140737	cellular_component	encapsulin nanocompartment
o	0140737	cellular_component	encapsulin nanocompartment
O	0140737	cellular_component	encapsulin nanocompartment
p	0140737	cellular_component	encapsulin nanocompartment
P	0140737	cellular_component	encapsulin nanocompartment
q	0140737	cellular_component	encapsulin nanocompartment
Q	0140737	cellular_component	encapsulin nanocompartment
r	0140737	cellular_component	encapsulin nanocompartment
R	0140737	cellular_component	encapsulin nanocompartment
s	0140737	cellular_component	encapsulin nanocompartment
S	0140737	cellular_component	encapsulin nanocompartment
t	0140737	cellular_component	encapsulin nanocompartment
T	0140737	cellular_component	encapsulin nanocompartment
u	0140737	cellular_component	encapsulin nanocompartment
U	0140737	cellular_component	encapsulin nanocompartment
v	0140737	cellular_component	encapsulin nanocompartment
V	0140737	cellular_component	encapsulin nanocompartment
w	0140737	cellular_component	encapsulin nanocompartment
W	0140737	cellular_component	encapsulin nanocompartment
x	0140737	cellular_component	encapsulin nanocompartment
X	0140737	cellular_component	encapsulin nanocompartment
Y	0140737	cellular_component	encapsulin nanocompartment
Z	0140737	cellular_component	encapsulin nanocompartment

Functional Information from PDB Data

site_id	AC1
Number of Residues	8
Details	binding site for residue FMN A 301

Chain	Residue
A	ASP90
A	ARG94
A	LYS232
A	ASP233
B	LYS66
f	GLU77
f	ARG79
f	GLU228

site_id	AC2
Number of Residues	8
Details	binding site for residue FMN B 301

Chain	Residue
B	ASP90
B	ARG94
B	LYS232
C	LYS66
Q	GLU77
Q	ARG79
Q	GLU228
B	TRP87

site_id	AC3
Number of Residues	8
Details	binding site for residue FMN C 301

Chain	Residue
C	ASP90
C	ARG94
C	LYS232
D	LYS66
I	GLU77
I	ARG79
I	GLU228
I	ARG236

site_id	AC4
Number of Residues	8
Details	binding site for residue FMN D 301

Chain	Residue
D	GLU77
D	ARG79
D	GLU228
D	ARG236
H	ASP90
H	ARG94
H	LYS232
I	LYS66

site_id	AC5
Number of Residues	9
Details	binding site for residue FMN D 302

Chain	Residue
D	ASP90
D	ARG94
D	LYS232
D	ASP233
E	LYS66
s	GLU77
s	ARG79
s	GLU228
s	ARG236

site_id	AC6
Number of Residues	7
Details	binding site for residue FMN E 301

Chain	Residue
A	LYS66
E	TRP87
E	ASP90
E	ARG94
E	LYS232
v	GLU77
v	ARG79

site_id	AC7
Number of Residues	10
Details	binding site for residue FMN F 301

Chain	Residue
F	TRP87
F	ASP90
F	ARG94
F	LYS232
F	ASP233
G	LYS66
W	GLU77
W	ARG79
W	GLU228
W	ARG236

site_id	AC8
Number of Residues	8
Details	binding site for residue FMN G 301

Chain	Residue
G	GLU77
G	ARG79
G	GLU228
V	TRP87
V	ASP90
V	ARG94
V	ASP233
W	LYS66

site_id	AC9
Number of Residues	8
Details	binding site for residue FMN G 302

Chain	Residue
G	ASP90
G	ARG94
G	LYS232
H	LYS66
o	GLU77
o	ARG79
o	GLU228
o	ARG236

site_id	AD1
Number of Residues	8
Details	binding site for residue FMN I 301

Chain	Residue
I	ASP90
I	ARG94
I	LYS232
J	LYS66
P	GLU77
P	ARG79
P	GLU228
P	ARG236

site_id	AD2
Number of Residues	9
Details	binding site for residue FMN J 301

Chain	Residue
3	GLU77
3	ARG79
3	GLU228
3	ARG236
F	LYS66
J	ASP90
J	ARG94
J	LYS232
J	ASP233

site_id	AD3
Number of Residues	8
Details	binding site for residue FMN M 301

Chain	Residue
0	LYS66
M	GLU77
M	ARG79
M	GLU228
M	ARG236
Z	ASP90
Z	ARG94
Z	LYS232

site_id	AD4
Number of Residues	8
Details	binding site for residue FMN M 302

Chain	Residue
M	TRP87
M	ASP90
M	ARG94
M	LYS232
N	LYS66
S	GLU77
S	ARG79
S	GLU228

site_id	AD5
Number of Residues	9
Details	binding site for residue FMN N 301

Chain	Residue
N	TRP87
N	ASP90
N	ARG94
N	LYS232
O	LYS66
i	GLU77
i	ARG79
i	GLU228
i	ARG236

site_id	AD6
Number of Residues	8
Details	binding site for residue FMN O 301

Chain	Residue
K	LYS66
O	TRP87
O	ASP90
O	ARG94
O	LYS232
l	GLU77
l	ARG79
l	GLU228

site_id	AD7
Number of Residues	8
Details	binding site for residue FMN P 301

Chain	Residue
C	GLU77
C	ARG79
C	GLU228
P	TRP87
P	ASP90
P	ARG94
P	LYS232
Q	LYS66

site_id	AD8
Number of Residues	8
Details	binding site for residue FMN Q 301

Chain	Residue
Q	ASP90
Q	ARG94
Q	LYS232
R	LYS66
e	GLU77
e	ARG79
e	GLU228
e	ARG236

site_id	AD9
Number of Residues	8
Details	binding site for residue FMN R 301

Chain	Residue
N	GLU77
N	ARG79
N	GLU228
N	ARG236
R	ASP90
R	ARG94
R	LYS232
S	LYS66

site_id	AE1
Number of Residues	10
Details	binding site for residue FMN S 301

Chain	Residue
S	TRP87
S	ASP90
S	ARG94
S	LYS232
T	VAL57
T	LYS66
Z	GLU77
Z	ARG79
Z	GLU228
Z	ARG236

site_id	AE2
Number of Residues	7
Details	binding site for residue FMN T 301

Chain	Residue
J	ARG79
J	GLU228
J	ARG236
P	LYS66
T	ASP90
T	ARG94
T	LYS232

site_id	AE3
Number of Residues	7
Details	binding site for residue FMN V 301

Chain	Residue
V	GLU77
V	ARG79
V	GLU228
o	TRP87
o	ASP90
o	ARG94
p	LYS66

site_id	AE4
Number of Residues	7
Details	binding site for residue FMN W 301

Chain	Residue
2	ARG79
2	GLU228
W	TRP87
W	ASP90
W	ARG94
W	LYS232
X	LYS66

site_id	AE5
Number of Residues	8
Details	binding site for residue FMN X 301

Chain	Residue
8	GLU77
8	ARG79
8	GLU228
8	ARG236
X	ASP90
X	ARG94
X	LYS232
Y	LYS66

site_id	AE6
Number of Residues	7
Details	binding site for residue FMN Y 301

Chain	Residue
U	LYS66
Y	ASP90
Y	ARG94
Y	LYS232
b	ARG79
b	GLU228
b	ARG236

site_id	AE7
Number of Residues	7
Details	binding site for residue FMN 0 301

Chain	Residue
0	TRP87
0	ASP90
0	ARG94
0	LYS232
1	LYS66
4	GLU77
4	ARG79

site_id	AE8
Number of Residues	7
Details	binding site for residue FMN 0 302

Chain	Residue
0	GLU77
0	ARG79
0	GLU228
0	ARG236
L	ASP90
L	ARG94
M	LYS66

site_id	AE9
Number of Residues	8
Details	binding site for residue FMN 1 301

Chain	Residue
1	GLU77
1	ARG79
1	GLU228
1	ARG236
4	LYS66
8	ASP90
8	ARG94
8	LYS232

site_id	AF1
Number of Residues	9
Details	binding site for residue FMN 1 302

Chain	Residue
1	ASP90
1	ARG94
1	LYS232
1	ASP233
2	LYS66
X	GLU77
X	ARG79
X	GLU228
X	ARG236

site_id	AF2
Number of Residues	7
Details	binding site for residue FMN 2 301

Chain	Residue
2	TRP87
2	ASP90
2	ARG94
3	LYS66
F	GLU77
F	ARG79
F	GLU228

site_id	AF3
Number of Residues	8
Details	binding site for residue FMN 3 301

Chain	Residue
3	ASP90
3	ARG94
T	GLU77
T	ARG79
T	GLU228
T	ARG236
Z	GLU61
Z	LYS66

site_id	AF4
Number of Residues	9
Details	binding site for residue FMN 4 301

Chain	Residue
4	ASP90
4	ARG94
4	LYS232
4	ASP233
5	LYS66
L	GLU77
L	ARG79
L	GLU228
L	ARG236

site_id	AF5
Number of Residues	8
Details	binding site for residue FMN 5 301

Chain	Residue
5	ASP90
5	ARG94
5	LYS232
6	LYS66
k	GLU77
k	ARG79
k	GLU228
k	ARG236

site_id	AF6
Number of Residues	9
Details	binding site for residue FMN 5 302

Chain	Residue
5	GLU77
5	ARG79
5	GLU228
5	ARG236
K	TRP87
K	ASP90
K	ARG94
K	LYS232
L	LYS66

site_id	AF7
Number of Residues	7
Details	binding site for residue FMN 6 301

Chain	Residue
6	TRP87
6	ASP90
6	ARG94
6	LYS232
7	LYS66
c	GLU77
c	ARG79

site_id	AF8
Number of Residues	9
Details	binding site for residue FMN 7 301

Chain	Residue
7	GLU77
7	ARG79
7	GLU228
7	ARG236
b	TRP87
b	ASP90
b	ARG94
b	LYS232
c	LYS66

site_id	AF9
Number of Residues	10
Details	binding site for residue FMN 7 302

Chain	Residue
7	TRP87
7	ASP90
7	ARG94
7	LYS232
7	ASP233
8	LYS66
Y	GLU77
Y	ARG79
Y	GLU228
Y	ARG236

site_id	AG1
Number of Residues	7
Details	binding site for residue FMN a 301

Chain	Residue
U	GLU77
U	ARG79
U	GLU228
a	TRP87
a	ASP90
a	ARG94
b	LYS66

site_id	AG2
Number of Residues	6
Details	binding site for residue FMN a 302

Chain	Residue
9	TRP87
9	ASP90
a	LYS66
a	TRP67
q	GLU77
q	ARG79

site_id	AG3
Number of Residues	8
Details	binding site for residue FMN c 301

Chain	Residue
c	ASP90
c	ARG94
c	LYS232
d	LYS66
j	GLU77
j	ARG79
j	GLU228
j	ARG236

site_id	AG4
Number of Residues	8
Details	binding site for residue FMN d 301

Chain	Residue
9	LYS66
d	ASP90
d	ARG94
d	LYS232
x	GLU77
x	ARG79
x	GLU228
x	ARG236

site_id	AG5
Number of Residues	9
Details	binding site for residue FMN e 301

Chain	Residue
B	GLU77
B	ARG79
B	GLU228
e	TRP87
e	ASP90
e	ARG94
e	LYS232
e	ASP233
f	LYS66

site_id	AG6
Number of Residues	9
Details	binding site for residue FMN f 301

Chain	Residue
f	TRP87
f	ASP90
f	ARG94
f	LYS232
g	LYS66
u	GLU77
u	ARG79
u	GLU228
u	ARG236

site_id	AG7
Number of Residues	6
Details	binding site for residue FMN h 301

Chain	Residue
h	ARG79
h	GLU228
h	ARG236
l	ASP90
l	ARG94
m	LYS66

site_id	AG8
Number of Residues	10
Details	binding site for residue FMN h 302

Chain	Residue
O	GLU77
O	ARG79
O	GLU228
O	ARG236
h	TRP87
h	ASP90
h	ARG94
h	LYS232
h	ASP233
i	LYS66

site_id	AG9
Number of Residues	7
Details	binding site for residue FMN i 301

Chain	Residue
R	GLU77
R	ARG79
R	GLU228
e	LYS66
i	ASP90
i	ARG94
i	LYS232

site_id	AH1
Number of Residues	9
Details	binding site for residue FMN j 301

Chain	Residue
6	GLU77
6	ARG79
6	GLU228
6	ARG236
j	ASP90
j	ARG94
j	LYS232
j	ASP233
k	LYS66

site_id	AH2
Number of Residues	7
Details	binding site for residue FMN k 301

Chain	Residue
K	ARG79
K	GLU228
K	ARG236
k	ASP90
k	ARG94
k	LYS232
l	LYS66

site_id	AH3
Number of Residues	8
Details	binding site for residue FMN m 301

Chain	Residue
m	ASP90
m	ARG94
m	LYS232
n	LYS66
t	GLU77
t	ARG79
t	GLU228
t	ARG236

site_id	AH4
Number of Residues	7
Details	binding site for residue FMN m 302

Chain	Residue
g	ASP90
g	ARG94
h	LYS66
m	GLU77
m	ARG79
m	GLU228
m	ARG236

site_id	AH5
Number of Residues	8
Details	binding site for residue FMN n 301

Chain	Residue
d	GLU77
d	ARG79
d	GLU228
j	LYS66
n	TRP87
n	ASP90
n	ARG94
n	LYS232

site_id	AH6
Number of Residues	8
Details	binding site for residue FMN p 301

Chain	Residue
a	GLU77
a	ARG79
a	GLU228
a	ARG236
p	ASP90
p	ARG94
p	LYS232
q	LYS66

site_id	AH7
Number of Residues	7
Details	binding site for residue FMN p 302

Chain	Residue
U	TRP87
U	ASP90
U	ARG94
V	LYS66
p	GLU77
p	ARG79
p	GLU228

site_id	AH8
Number of Residues	10
Details	binding site for residue FMN q 301

Chain	Residue
q	TRP87
q	ASP90
q	ARG94
q	LYS232
q	ASP233
r	LYS66
w	GLU77
w	ARG79
w	GLU228
w	ARG236

site_id	AH9
Number of Residues	8
Details	binding site for residue FMN r 301

Chain	Residue
r	GLU77
r	ARG79
r	GLU228
r	ARG236
v	TRP87
v	ASP90
v	ARG94
w	LYS66

site_id	AI1
Number of Residues	6
Details	binding site for residue FMN r 302

Chain	Residue
E	GLU77
E	ARG79
E	GLU228
r	ASP90
r	ARG94
s	LYS66

site_id	AI2
Number of Residues	5
Details	binding site for residue FMN s 301

Chain	Residue
H	ARG79
H	GLU228
H	ARG236
o	LYS66
s	ASP90

site_id	AI3
Number of Residues	8
Details	binding site for residue FMN t 301

Chain	Residue
g	GLU77
g	ARG79
g	GLU228
t	TRP87
t	ASP90
t	ARG94
t	LYS232
u	LYS66

site_id	AI4
Number of Residues	6
Details	binding site for residue FMN u 301

Chain	Residue
A	ARG79
u	TRP87
u	ASP90
u	ARG94
u	LYS232
v	LYS66

site_id	AI5
Number of Residues	8
Details	binding site for residue FMN w 301

Chain	Residue
9	GLU77
9	ARG79
9	GLU228
w	TRP87
w	ASP90
w	ARG94
w	LYS232
x	LYS66

site_id	AI6
Number of Residues	8
Details	binding site for residue FMN x 301

Chain	Residue
n	GLU77
n	ARG79
n	GLU228
n	ARG236
t	LYS66
x	ASP90
x	ARG94
x	LYS232

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	180
Details	Binding site: {"evidences":[{"source":"PubMed","id":"33953921","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"7KQ5","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	60
Details	Binding site: {"evidences":[{"source":"PubMed","id":"34815415","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"33953921","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"7KQ5","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7MU1","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	240
Details	Binding site: {"evidences":[{"source":"PubMed","id":"34815415","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"7MU1","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)