6WCV
Tartryl-CoA bound to human GTP-specific succinyl-CoA synthetase
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003824 | molecular_function | catalytic activity |
| B | 0000287 | molecular_function | magnesium ion binding |
| B | 0003824 | molecular_function | catalytic activity |
| B | 0004775 | molecular_function | succinate-CoA ligase (ADP-forming) activity |
| B | 0004776 | molecular_function | succinate-CoA ligase (GDP-forming) activity |
| B | 0005515 | molecular_function | protein binding |
| B | 0005524 | molecular_function | ATP binding |
| B | 0005525 | molecular_function | GTP binding |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0005739 | cellular_component | mitochondrion |
| B | 0005759 | cellular_component | mitochondrial matrix |
| B | 0005886 | cellular_component | plasma membrane |
| B | 0006099 | biological_process | tricarboxylic acid cycle |
| B | 0006104 | biological_process | succinyl-CoA metabolic process |
| B | 0006105 | biological_process | succinate metabolic process |
| B | 0016874 | molecular_function | ligase activity |
| B | 0019003 | molecular_function | GDP binding |
| B | 0032991 | cellular_component | protein-containing complex |
| B | 0042709 | cellular_component | succinate-CoA ligase complex |
| B | 0044877 | molecular_function | protein-containing complex binding |
| B | 0045244 | cellular_component | succinate-CoA ligase complex (GDP-forming) |
| B | 0046872 | molecular_function | metal ion binding |
| B | 1901289 | biological_process | succinyl-CoA catabolic process |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 46 |
| Details | binding site for residue TUY A 401 |
| Chain | Residue |
| A | GLY22 |
| A | VAL80 |
| A | PRO81 |
| A | PRO82 |
| A | ILE103 |
| A | THR104 |
| A | GLU105 |
| A | ASN131 |
| A | CYS132 |
| A | PRO133 |
| A | ILE145 |
| A | THR24 |
| A | SER162 |
| A | GLY163 |
| A | THR164 |
| A | HIS259 |
| A | HOH502 |
| A | HOH505 |
| A | HOH531 |
| A | HOH551 |
| A | HOH555 |
| A | HOH569 |
| A | GLY25 |
| A | HOH574 |
| A | HOH594 |
| A | HOH600 |
| A | HOH606 |
| A | HOH619 |
| A | HOH635 |
| A | HOH636 |
| A | HOH642 |
| A | HOH666 |
| A | HOH677 |
| A | LYS26 |
| A | HOH685 |
| A | HOH691 |
| A | HOH698 |
| B | GLY272 |
| B | ALA273 |
| B | GLY274 |
| B | GLY298 |
| A | GLN27 |
| A | THR46 |
| A | PRO48 |
| A | LYS50 |
| A | TYR79 |
Functional Information from PROSITE/UniProt
| site_id | PS00399 |
| Number of Residues | 14 |
| Details | SUCCINYL_COA_LIG_2 ATP-citrate lyase / succinyl-CoA ligases family active site. GltAppgr...RMGHAG |
| Chain | Residue | Details |
| A | GLY248-GLY261 |
| site_id | PS01216 |
| Number of Residues | 30 |
| Details | SUCCINYL_COA_LIG_1 ATP-citrate lyase / succinyl-CoA ligases family signature 1. SRSGTLTyEavhqttqvglGqslcVGIGGD |
| Chain | Residue | Details |
| A | SER160-ASP189 |
| site_id | PS01217 |
| Number of Residues | 26 |
| Details | SUCCINYL_COA_LIG_3 ATP-citrate lyase / succinyl-CoA ligases family signature 3. GnIacFvNGAGLAmatcDiIflngGK |
| Chain | Residue | Details |
| B | GLY264-LYS289 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 7 |
| Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_03221 |
| Chain | Residue | Details |
| B | GLN20 | |
| B | GLY53 | |
| B | LEU109 | |
| B | ASN206 | |
| B | ASP220 | |
| B | ASN271 | |
| B | GLY328 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 2 |
| Details | SITE: Important for substrate specificity => ECO:0000255|HAMAP-Rule:MF_03221 |
| Chain | Residue | Details |
| B | GLU42 | |
| B | ASP110 | |
| A | ILE103 | |
| A | TYR167 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 9 |
| Details | MOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:Q9Z2I8 |
| Chain | Residue | Details |
| B | LYS36 | |
| B | LYS95 | |
| B | LYS102 | |
| B | LYS163 | |
| B | LYS181 | |
| B | LYS234 | |
| B | LYS310 | |
| B | LYS349 | |
| B | LYS386 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 2 |
| Details | MOD_RES: N6-succinyllysine => ECO:0000250|UniProtKB:Q9Z2I8 |
| Chain | Residue | Details |
| B | LYS41 | |
| B | LYS301 |
| site_id | SWS_FT_FI5 |
| Number of Residues | 1 |
| Details | MOD_RES: Phosphoserine => ECO:0000250|UniProtKB:Q9Z2I8 |
| Chain | Residue | Details |
| B | SER124 | |
| A | LYS65 |
| site_id | SWS_FT_FI6 |
| Number of Residues | 2 |
| Details | MOD_RES: N6-acetyllysine => ECO:0007744|PubMed:19608861 |
| Chain | Residue | Details |
| B | LYS190 | |
| B | LYS254 |
