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6W9R

Crystal structure of an OTU deubiquitinase from Wolbachia pipientis wMel bound to ubiquitin

Functional Information from PDB Data
site_idAC1
Number of Residues13
Detailsbinding site for residue FLC M 101
ChainResidue
AHIS99
MHOH209
MHOH213
MHOH215
MHOH226
AASP100
AHIS105
MTHR7
MTHR9
MGLU34
MILE36
MLEU71
MHOH208

site_idAC2
Number of Residues14
Detailsbinding site for residue FLC N 101
ChainResidue
BHIS99
BASP100
BGLY103
BHIS105
NTHR7
NTHR9
NGLU34
NILE36
NLEU71
NHOH205
NHOH210
NHOH216
NHOH226
NHOH229

site_idAC3
Number of Residues12
Detailsbinding site for residue FLC O 101
ChainResidue
FHIS99
FASP100
FHIS105
OTHR9
OGLU34
OILE36
OLEU71
OHOH3709
OHOH3710
OHOH3711
OHOH3715
OHOH3735

site_idAC4
Number of Residues12
Detailsbinding site for residue FLC P 101
ChainResidue
DHIS99
DASP100
DHIS105
PLYS11
PGLU34
PILE36
PLEU71
PHOH208
PHOH220
PHOH227
PHOH228
PHOH233

site_idAC5
Number of Residues13
Detailsbinding site for residue FLC Q 101
ChainResidue
IHIS99
IASP100
IHIS105
QTHR7
QLYS11
QGLU34
QILE36
QLEU71
QHOH206
QHOH208
QHOH210
QHOH211
QHOH217

site_idAC6
Number of Residues12
Detailsbinding site for residue FLC R 101
ChainResidue
JHIS99
JASP100
JASN101
JHIS105
RTHR7
RGLU34
RILE36
RLEU71
RHOH207
RHOH209
RHOH220
RHOH223

site_idAC7
Number of Residues14
Detailsbinding site for residue FLC S 101
ChainResidue
EHIS99
EASP100
EGLY103
EHIS105
STHR7
STHR9
SGLU34
SILE36
SLEU71
SHOH207
SHOH212
SHOH216
SHOH225
SHOH233

site_idAC8
Number of Residues12
Detailsbinding site for residue FLC T 101
ChainResidue
THOH207
THOH212
THOH221
CHIS99
CASP100
CGLY103
CHIS105
TTHR9
TGLU34
TILE36
TLEU71
THOH204

site_idAC9
Number of Residues13
Detailsbinding site for residue FLC U 101
ChainResidue
KHIS99
KASP100
KHIS105
UTHR7
UTHR9
UGLU34
UILE36
ULEU71
UHOH207
UHOH213
UHOH214
UHOH218
UHOH231

site_idAD1
Number of Residues13
Detailsbinding site for residue FLC V 101
ChainResidue
LHIS99
LASP100
LHIS105
VTHR7
VTHR9
VGLU34
VILE36
VLEU71
VHOH202
VHOH210
VHOH226
VHOH227
VHOH249

site_idAD2
Number of Residues14
Detailsbinding site for residue FLC W 101
ChainResidue
GHIS99
GASP100
GHIS105
GHOH332
WTHR7
WTHR9
WILE13
WGLU34
WILE36
WLEU71
WHOH205
WHOH211
WHOH216
WHOH219

site_idAD3
Number of Residues13
Detailsbinding site for residue FLC X 101
ChainResidue
HHIS99
HASP100
HGLY103
HHIS105
HHOH364
XTHR7
XGLU34
XILE36
XLEU71
XHOH205
XHOH211
XHOH212
XHOH233

site_idAD4
Number of Residues30
Detailsbinding site for Di-peptide CYS A 53 and NEH M 76
ChainResidue
AILE48
AASN50
AGLY51
ASER52
APHE54
APHE55
AASP56
ASER57
AALA72
AGLU73
ALYS74
ALEU75
AASN77
AASP78
ACYS79
AARG80
AILE117
AMET118
AARG119
AASN120
AARG122
ATRP123
ALEU190
AHIS191
APHE192
MGLU24
MGLU51
MASP52
MARG54
MGLY75

site_idAD5
Number of Residues31
Detailsbinding site for Di-peptide CYS B 53 and NEH N 76
ChainResidue
BILE48
BASN50
BGLY51
BSER52
BPHE54
BPHE55
BASP56
BSER57
BALA72
BGLU73
BLYS74
BLEU75
BASN77
BASP78
BCYS79
BARG80
BILE117
BARG119
BASN120
BARG122
BTRP123
BLEU190
BHIS191
BPHE192
NGLU24
NGLU51
NASP52
NARG54
NGLY75
NHOH240
VHOH222

site_idAD6
Number of Residues31
Detailsbinding site for Di-peptide CYS C 53 and NEH T 76
ChainResidue
CILE48
CASN50
CGLY51
CSER52
CPHE54
CPHE55
CASP56
CSER57
CALA72
CGLU73
CLYS74
CLEU75
CASN77
CASP78
CCYS79
CARG80
CILE117
CARG119
CASN120
CARG122
CTRP123
CLEU190
CHIS191
CPHE192
TGLU24
TGLU51
TASP52
TARG54
TGLY75
THOH214
THOH246

site_idAD7
Number of Residues30
Detailsbinding site for Di-peptide CYS D 53 and NEH P 76
ChainResidue
DILE48
DASN50
DGLY51
DSER52
DPHE54
DPHE55
DASP56
DSER57
DALA72
DGLU73
DLYS74
DLEU75
DASN77
DASP78
DCYS79
DARG80
DILE117
DARG119
DASN120
DARG122
DTRP123
DLEU190
DHIS191
DPHE192
PGLU24
PGLU51
PASP52
PARG54
PGLY75
PHOH235

site_idAD8
Number of Residues33
Detailsbinding site for Di-peptide CYS E 53 and NEH S 76
ChainResidue
EILE48
EASN50
EGLY51
ESER52
EPHE54
EPHE55
EASP56
ESER57
EALA72
EGLU73
ELYS74
ELEU75
EASN77
EASP78
ECYS79
EARG80
EILE117
EMET118
EARG119
EASN120
EARG122
ETRP123
ELEU190
EHIS191
EPHE192
QHOH204
SGLU24
SGLU51
SASP52
SARG54
SGLY75
SHOH224
SHOH238

site_idAD9
Number of Residues31
Detailsbinding site for Di-peptide CYS F 53 and NEH O 76
ChainResidue
FILE48
FASN50
FGLY51
FSER52
FPHE54
FPHE55
FASP56
FSER57
FALA72
FGLU73
FLYS74
FLEU75
FASN77
FASP78
FCYS79
FARG80
FILE117
FARG119
FASN120
FARG122
FTRP123
FLEU190
FHIS191
FPHE192
MHOH218
OGLU24
OGLU51
OASP52
OARG54
OGLY75
OHOH3753

site_idAE1
Number of Residues30
Detailsbinding site for Di-peptide CYS G 53 and NEH W 76
ChainResidue
GILE48
GASN50
GGLY51
GSER52
GPHE54
GPHE55
GASP56
GSER57
GALA72
GGLU73
GLYS74
GLEU75
GASN77
GASP78
GCYS79
GARG80
GILE117
GMET118
GARG119
GASN120
GARG122
GTRP123
GLEU190
GHIS191
GPHE192
WGLU24
WGLU51
WASP52
WARG54
WGLY75

site_idAE2
Number of Residues30
Detailsbinding site for Di-peptide CYS H 53 and NEH X 76
ChainResidue
HILE48
HASN50
HGLY51
HSER52
HPHE54
HPHE55
HASP56
HSER57
HALA72
HGLU73
HLYS74
HLEU75
HASN77
HASP78
HCYS79
HARG80
HILE117
HMET118
HARG119
HASN120
HARG122
HTRP123
HLEU190
HHIS191
HPHE192
XGLU24
XGLU51
XASP52
XARG54
XGLY75

site_idAE3
Number of Residues29
Detailsbinding site for Di-peptide CYS I 53 and NEH Q 76
ChainResidue
IILE48
IASN50
IGLY51
ISER52
IPHE54
IPHE55
IASP56
ISER57
IALA72
IGLU73
ILYS74
ILEU75
IASN77
IASP78
ICYS79
IARG80
IILE117
IARG119
IASN120
IARG122
ITRP123
ILEU190
IHIS191
IPHE192
QGLU24
QGLU51
QASP52
QARG54
QGLY75

site_idAE4
Number of Residues32
Detailsbinding site for Di-peptide CYS J 53 and NEH R 76
ChainResidue
JILE48
JASN50
JGLY51
JSER52
JPHE54
JPHE55
JASP56
JSER57
JALA72
JGLU73
JLYS74
JLEU75
JASN77
JASP78
JCYS79
JARG80
JILE117
JARG119
JASN120
JARG122
JTRP123
JLEU190
JHIS191
JPHE192
RGLU24
RGLU51
RASP52
RARG54
RGLY75
RHOH221
RHOH263
UHOH225

site_idAE5
Number of Residues29
Detailsbinding site for Di-peptide CYS K 53 and NEH U 76
ChainResidue
KILE48
KASN50
KGLY51
KSER52
KPHE54
KPHE55
KASP56
KSER57
KALA72
KGLU73
KLYS74
KLEU75
KASN77
KASP78
KCYS79
KARG80
KILE117
KMET118
KARG119
KASN120
KARG122
KTRP123
KLEU190
KHIS191
KPHE192
UGLU51
UASP52
UARG54
UGLY75

site_idAE6
Number of Residues32
Detailsbinding site for Di-peptide CYS L 53 and NEH V 76
ChainResidue
LILE48
LASN50
LGLY51
LSER52
LPHE54
LPHE55
LASP56
LSER57
LALA72
LGLU73
LLYS74
LLEU75
LASN77
LASP78
LCYS79
LARG80
LILE117
LMET118
LARG119
LASN120
LARG122
LTRP123
LLEU190
LHIS191
LPHE192
LHOH301
VGLU24
VGLU51
VASP52
VARG54
VGLY75
VHOH252

site_idAE7
Number of Residues8
Detailsbinding site for Di-peptide GLY O 75 and NEH O 76
ChainResidue
FASN50
FCYS53
FTRP123
FLEU190
FPHE192
FHOH337
FHOH343
OARG74

site_idAE8
Number of Residues9
Detailsbinding site for Di-peptide GLY P 75 and NEH P 76
ChainResidue
DASN50
DCYS53
DTRP123
DLEU190
DHIS191
DPHE192
DHOH332
PARG74
PHOH231

site_idAE9
Number of Residues9
Detailsbinding site for Di-peptide GLY Q 75 and NEH Q 76
ChainResidue
IASN50
ICYS53
ITRP123
ILEU190
IHIS191
IPHE192
IHOH358
IHOH367
QARG74

site_idAF1
Number of Residues8
Detailsbinding site for Di-peptide GLY R 75 and NEH R 76
ChainResidue
JASN50
JCYS53
JTRP123
JLEU190
JPHE192
JHOH348
JHOH378
RARG74

site_idAF2
Number of Residues9
Detailsbinding site for Di-peptide GLY S 75 and NEH S 76
ChainResidue
EASN50
ECYS53
ETRP123
ELEU190
EHIS191
EPHE192
EHOH355
EHOH356
SARG74

site_idAF3
Number of Residues9
Detailsbinding site for Di-peptide GLY T 75 and NEH T 76
ChainResidue
CASN50
CCYS53
CTRP123
CLEU190
CHIS191
CPHE192
CHOH333
CHOH382
TARG74

site_idAF4
Number of Residues9
Detailsbinding site for Di-peptide GLY U 75 and NEH U 76
ChainResidue
KASN50
KCYS53
KTRP123
KLEU190
KHIS191
KPHE192
KHOH328
UARG74
UHOH228

site_idAF5
Number of Residues8
Detailsbinding site for Di-peptide GLY V 75 and NEH V 76
ChainResidue
LASN50
LCYS53
LTRP123
LLEU190
LPHE192
LHOH342
VARG74
VHOH235

site_idAF6
Number of Residues8
Detailsbinding site for Di-peptide GLY W 75 and NEH W 76
ChainResidue
GASN50
GCYS53
GTRP123
GLEU190
GPHE192
GHOH348
GHOH355
WARG74

site_idAF7
Number of Residues8
Detailsbinding site for Di-peptide GLY X 75 and NEH X 76
ChainResidue
HASN50
HCYS53
HTRP123
HLEU190
HPHE192
HHOH366
HHOH372
XARG74

Functional Information from PROSITE/UniProt
site_idPS00299
Number of Residues26
DetailsUBIQUITIN_1 Ubiquitin domain signature. KakIqDkegIPpdqQrLIFaGkqleD
ChainResidueDetails
MLYS27-ASP52

251801

PDB entries from 2026-04-08

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