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6W17

Structure of Dip1-activated Arp2/3 complex with nucleated actin filament

Functional Information from GO Data
ChainGOidnamespacecontents
A0000281biological_processmitotic cytokinesis
A0003779molecular_functionactin binding
A0005515molecular_functionprotein binding
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0005856cellular_componentcytoskeleton
A0005885cellular_componentArp2/3 protein complex
A0006897biological_processendocytosis
A0030036biological_processactin cytoskeleton organization
A0030041biological_processactin filament polymerization
A0030479cellular_componentactin cortical patch
A0032153cellular_componentcell division site
A0034314biological_processArp2/3 complex-mediated actin nucleation
A0044396biological_processactin cortical patch organization
A0051015molecular_functionactin filament binding
A0051285cellular_componentcell cortex of cell tip
B0000147biological_processactin cortical patch assembly
B0003779molecular_functionactin binding
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0005856cellular_componentcytoskeleton
B0005885cellular_componentArp2/3 protein complex
B0005938cellular_componentcell cortex
B0006897biological_processendocytosis
B0030479cellular_componentactin cortical patch
B0031097cellular_componentmedial cortex
B0034314biological_processArp2/3 complex-mediated actin nucleation
B0051015molecular_functionactin filament binding
B0051285cellular_componentcell cortex of cell tip
C0000147biological_processactin cortical patch assembly
C0003779molecular_functionactin binding
C0005737cellular_componentcytoplasm
C0005829cellular_componentcytosol
C0005856cellular_componentcytoskeleton
C0005885cellular_componentArp2/3 protein complex
C0006897biological_processendocytosis
C0015629cellular_componentactin cytoskeleton
C0030036biological_processactin cytoskeleton organization
C0030479cellular_componentactin cortical patch
C0030866biological_processcortical actin cytoskeleton organization
C0032153cellular_componentcell division site
C0034314biological_processArp2/3 complex-mediated actin nucleation
C0051015molecular_functionactin filament binding
C0051286cellular_componentcell tip
D0000147biological_processactin cortical patch assembly
D0003779molecular_functionactin binding
D0005200molecular_functionstructural constituent of cytoskeleton
D0005634cellular_componentnucleus
D0005737cellular_componentcytoplasm
D0005829cellular_componentcytosol
D0005856cellular_componentcytoskeleton
D0005885cellular_componentArp2/3 protein complex
D0006897biological_processendocytosis
D0015629cellular_componentactin cytoskeleton
D0030041biological_processactin filament polymerization
D0030479cellular_componentactin cortical patch
D0032153cellular_componentcell division site
D0034314biological_processArp2/3 complex-mediated actin nucleation
D0051015molecular_functionactin filament binding
D0051286cellular_componentcell tip
E0000147biological_processactin cortical patch assembly
E0003779molecular_functionactin binding
E0005634cellular_componentnucleus
E0005737cellular_componentcytoplasm
E0005826cellular_componentactomyosin contractile ring
E0005829cellular_componentcytosol
E0005856cellular_componentcytoskeleton
E0005885cellular_componentArp2/3 protein complex
E0006897biological_processendocytosis
E0007163biological_processestablishment or maintenance of cell polarity
E0030479cellular_componentactin cortical patch
E0030833biological_processregulation of actin filament polymerization
E0032153cellular_componentcell division site
E0032432cellular_componentactin filament bundle
E0034314biological_processArp2/3 complex-mediated actin nucleation
E0044396biological_processactin cortical patch organization
E0051015molecular_functionactin filament binding
E0051286cellular_componentcell tip
F0000147biological_processactin cortical patch assembly
F0003779molecular_functionactin binding
F0005634cellular_componentnucleus
F0005737cellular_componentcytoplasm
F0005829cellular_componentcytosol
F0005856cellular_componentcytoskeleton
F0005885cellular_componentArp2/3 protein complex
F0006897biological_processendocytosis
F0015629cellular_componentactin cytoskeleton
F0030041biological_processactin filament polymerization
F0030479cellular_componentactin cortical patch
F0034314biological_processArp2/3 complex-mediated actin nucleation
F0051015molecular_functionactin filament binding
G0000147biological_processactin cortical patch assembly
G0003779molecular_functionactin binding
G0005634cellular_componentnucleus
G0005737cellular_componentcytoplasm
G0005829cellular_componentcytosol
G0005856cellular_componentcytoskeleton
G0005885cellular_componentArp2/3 protein complex
G0006897biological_processendocytosis
G0015629cellular_componentactin cytoskeleton
G0030479cellular_componentactin cortical patch
G0030833biological_processregulation of actin filament polymerization
G0034314biological_processArp2/3 complex-mediated actin nucleation
G0043332cellular_componentmating projection tip
G0051015molecular_functionactin filament binding
H0000147biological_processactin cortical patch assembly
H0005634cellular_componentnucleus
H0005737cellular_componentcytoplasm
H0006897biological_processendocytosis
H0030479cellular_componentactin cortical patch
H0032153cellular_componentcell division site
H0034314biological_processArp2/3 complex-mediated actin nucleation
H0043332cellular_componentmating projection tip
H0044379biological_processprotein localization to actin cortical patch
H0051286cellular_componentcell tip
H0051666biological_processactin cortical patch localization
H0071933molecular_functionArp2/3 complex binding
I0000287molecular_functionmagnesium ion binding
I0001725cellular_componentstress fiber
I0003785molecular_functionactin monomer binding
I0005509molecular_functioncalcium ion binding
I0005515molecular_functionprotein binding
I0005523molecular_functiontropomyosin binding
I0005524molecular_functionATP binding
I0005737cellular_componentcytoplasm
I0005856cellular_componentcytoskeleton
I0005865cellular_componentstriated muscle thin filament
I0005884cellular_componentactin filament
I0010628biological_processpositive regulation of gene expression
I0016787molecular_functionhydrolase activity
I0019904molecular_functionprotein domain specific binding
I0030027cellular_componentlamellipodium
I0030041biological_processactin filament polymerization
I0030175cellular_componentfilopodium
I0030240biological_processskeletal muscle thin filament assembly
I0031013molecular_functiontroponin I binding
I0031432molecular_functiontitin binding
I0031941cellular_componentfilamentous actin
I0032036molecular_functionmyosin heavy chain binding
I0032432cellular_componentactin filament bundle
I0042802molecular_functionidentical protein binding
I0044297cellular_componentcell body
I0048306molecular_functioncalcium-dependent protein binding
I0048741biological_processskeletal muscle fiber development
I0051017biological_processactin filament bundle assembly
I0090131biological_processmesenchyme migration
I0098723cellular_componentskeletal muscle myofibril
I0140660molecular_functioncytoskeletal motor activator activity
J0000287molecular_functionmagnesium ion binding
J0001725cellular_componentstress fiber
J0003785molecular_functionactin monomer binding
J0005509molecular_functioncalcium ion binding
J0005515molecular_functionprotein binding
J0005523molecular_functiontropomyosin binding
J0005524molecular_functionATP binding
J0005737cellular_componentcytoplasm
J0005856cellular_componentcytoskeleton
J0005865cellular_componentstriated muscle thin filament
J0005884cellular_componentactin filament
J0010628biological_processpositive regulation of gene expression
J0016787molecular_functionhydrolase activity
J0019904molecular_functionprotein domain specific binding
J0030027cellular_componentlamellipodium
J0030041biological_processactin filament polymerization
J0030175cellular_componentfilopodium
J0030240biological_processskeletal muscle thin filament assembly
J0031013molecular_functiontroponin I binding
J0031432molecular_functiontitin binding
J0031941cellular_componentfilamentous actin
J0032036molecular_functionmyosin heavy chain binding
J0032432cellular_componentactin filament bundle
J0042802molecular_functionidentical protein binding
J0044297cellular_componentcell body
J0048306molecular_functioncalcium-dependent protein binding
J0048741biological_processskeletal muscle fiber development
J0051017biological_processactin filament bundle assembly
J0090131biological_processmesenchyme migration
J0098723cellular_componentskeletal muscle myofibril
J0140660molecular_functioncytoskeletal motor activator activity
K0000287molecular_functionmagnesium ion binding
K0001725cellular_componentstress fiber
K0003785molecular_functionactin monomer binding
K0005509molecular_functioncalcium ion binding
K0005515molecular_functionprotein binding
K0005523molecular_functiontropomyosin binding
K0005524molecular_functionATP binding
K0005737cellular_componentcytoplasm
K0005856cellular_componentcytoskeleton
K0005865cellular_componentstriated muscle thin filament
K0005884cellular_componentactin filament
K0010628biological_processpositive regulation of gene expression
K0016787molecular_functionhydrolase activity
K0019904molecular_functionprotein domain specific binding
K0030027cellular_componentlamellipodium
K0030041biological_processactin filament polymerization
K0030175cellular_componentfilopodium
K0030240biological_processskeletal muscle thin filament assembly
K0031013molecular_functiontroponin I binding
K0031432molecular_functiontitin binding
K0031941cellular_componentfilamentous actin
K0032036molecular_functionmyosin heavy chain binding
K0032432cellular_componentactin filament bundle
K0042802molecular_functionidentical protein binding
K0044297cellular_componentcell body
K0048306molecular_functioncalcium-dependent protein binding
K0048741biological_processskeletal muscle fiber development
K0051017biological_processactin filament bundle assembly
K0090131biological_processmesenchyme migration
K0098723cellular_componentskeletal muscle myofibril
K0140660molecular_functioncytoskeletal motor activator activity
L0000287molecular_functionmagnesium ion binding
L0001725cellular_componentstress fiber
L0003785molecular_functionactin monomer binding
L0005509molecular_functioncalcium ion binding
L0005515molecular_functionprotein binding
L0005523molecular_functiontropomyosin binding
L0005524molecular_functionATP binding
L0005737cellular_componentcytoplasm
L0005856cellular_componentcytoskeleton
L0005865cellular_componentstriated muscle thin filament
L0005884cellular_componentactin filament
L0010628biological_processpositive regulation of gene expression
L0016787molecular_functionhydrolase activity
L0019904molecular_functionprotein domain specific binding
L0030027cellular_componentlamellipodium
L0030041biological_processactin filament polymerization
L0030175cellular_componentfilopodium
L0030240biological_processskeletal muscle thin filament assembly
L0031013molecular_functiontroponin I binding
L0031432molecular_functiontitin binding
L0031941cellular_componentfilamentous actin
L0032036molecular_functionmyosin heavy chain binding
L0032432cellular_componentactin filament bundle
L0042802molecular_functionidentical protein binding
L0044297cellular_componentcell body
L0048306molecular_functioncalcium-dependent protein binding
L0048741biological_processskeletal muscle fiber development
L0051017biological_processactin filament bundle assembly
L0090131biological_processmesenchyme migration
L0098723cellular_componentskeletal muscle myofibril
L0140660molecular_functioncytoskeletal motor activator activity
Functional Information from PDB Data
site_idAC1
Number of Residues1
Detailsbinding site for residue MG A 500
ChainResidue
AATP501

site_idAC2
Number of Residues13
Detailsbinding site for residue ATP A 501
ChainResidue
AGLU242
AGLY335
ASER336
ALEU338
AMG500
AGLY13
ATHR14
AGLY15
ATYR16
ALYS18
AGLY187
AASP188
ALYS241

site_idAC3
Number of Residues3
Detailsbinding site for residue MG B 500
ChainResidue
BGLN137
BASP154
BATP501

site_idAC4
Number of Residues12
Detailsbinding site for residue ATP B 501
ChainResidue
BGLY11
BTHR12
BPHE14
BGLN137
BGLY156
BASP157
BARG210
BLYS213
BGLU214
BGLY302
BARG347
BMG500

site_idAC5
Number of Residues13
Detailsbinding site for residue ADP I 401
ChainResidue
IASP11
IGLY13
ILEU16
ILYS18
IGLY156
IASP157
ILYS213
IGLU214
IGLY301
IGLY302
ITHR303
ILYS336
IMG402

site_idAC6
Number of Residues4
Detailsbinding site for residue MG I 402
ChainResidue
IGLN137
IASP154
IGLY156
IADP401

site_idAC7
Number of Residues10
Detailsbinding site for residue ADP J 401
ChainResidue
JGLY13
JLYS18
JGLN137
JGLY156
JASP157
JLYS213
JGLU214
JGLY302
JTHR303
JMG402

site_idAC8
Number of Residues4
Detailsbinding site for residue MG J 402
ChainResidue
JGLN137
JASP154
JGLY156
JADP401

site_idAC9
Number of Residues13
Detailsbinding site for residue ADP K 401
ChainResidue
KGLY13
KLEU16
KLYS18
KGLY156
KASP157
KLYS213
KGLU214
KGLY301
KGLY302
KTHR303
KMET305
KLYS336
KMG402

site_idAD1
Number of Residues2
Detailsbinding site for residue MG K 402
ChainResidue
KGLY156
KADP401

site_idAD2
Number of Residues13
Detailsbinding site for residue ADP L 401
ChainResidue
LGLY13
LLYS18
LGLN137
LGLY156
LASP157
LARG210
LLYS213
LGLU214
LGLY302
LTHR303
LTYR306
LLYS336
LMG402

site_idAD3
Number of Residues3
Detailsbinding site for residue MG L 402
ChainResidue
LGLN137
LGLY156
LADP401

site_idAD4
Number of Residues4
Detailsbinding site for Di-peptide HYP X 1 and CYS X 7
ChainResidue
BASP179
MALA2
MTRP3
MALO6

site_idAD5
Number of Residues5
Detailsbinding site for Di-peptide HYP X 1 and ALA X 2
ChainResidue
MCYS7
BGLU72
BILE75
MTRP3
MG5G4

site_idAD6
Number of Residues8
Detailsbinding site for Di-peptide TRP X 3 and G5G X 4
ChainResidue
BARG177
IGLY197
IGLN246
MHYP1
MALA2
MALA5
MALO6
MCYS7

site_idAD7
Number of Residues4
Detailsbinding site for Di-peptide G5G X 4 and ALA X 5
ChainResidue
IGLN246
MALA2
MTRP3
MALO6

site_idAD8
Number of Residues6
Detailsbinding site for Di-peptide ALA X 5 and ALO X 6
ChainResidue
ISER199
IGLU205
IGLN246
MTRP3
MG5G4
MCYS7

site_idAD9
Number of Residues7
Detailsbinding site for Di-peptide ALO X 6 and CYS X 7
ChainResidue
BASP179
ISER199
IGLU205
MHYP1
MALA2
MTRP3
MALA5

site_idAE1
Number of Residues4
Detailsbinding site for Di-peptide HYP Y 1 and CYS Y 7
ChainResidue
JASP179
OALA2
OTRP3
OALO6

site_idAE2
Number of Residues3
Detailsbinding site for Di-peptide HYP Y 1 and ALA Y 2
ChainResidue
OTRP3
OG5G4
OCYS7

site_idAE3
Number of Residues8
Detailsbinding site for Di-peptide TRP Y 3 and G5G Y 4
ChainResidue
JILE75
JARG177
KGLY197
OHYP1
OALA2
OALA5
OALO6
OCYS7

site_idAE4
Number of Residues5
Detailsbinding site for Di-peptide G5G Y 4 and ALA Y 5
ChainResidue
KGLY197
KGLN246
OALA2
OTRP3
OALO6

site_idAE5
Number of Residues5
Detailsbinding site for Di-peptide ALA Y 5 and ALO Y 6
ChainResidue
KSER199
KGLN246
OTRP3
OG5G4
OCYS7

site_idAE6
Number of Residues6
Detailsbinding site for Di-peptide ALO Y 6 and CYS Y 7
ChainResidue
JASP179
KSER199
OHYP1
OALA2
OTRP3
OALA5

site_idAE7
Number of Residues5
Detailsbinding site for Di-peptide HYP Z 1 and CYS Z 7
ChainResidue
IASP179
JSER199
NALA2
NTRP3
NALO6

site_idAE8
Number of Residues4
Detailsbinding site for Di-peptide HYP Z 1 and ALA Z 2
ChainResidue
IILE75
NTRP3
NG5G4
NCYS7

site_idAE9
Number of Residues7
Detailsbinding site for Di-peptide TRP Z 3 and G5G Z 4
ChainResidue
IARG177
JGLY197
NHYP1
NALA2
NALA5
NALO6
NCYS7

site_idAF1
Number of Residues6
Detailsbinding site for Di-peptide G5G Z 4 and ALA Z 5
ChainResidue
BARG290
JTYR198
JGLN246
NALA2
NTRP3
NALO6

site_idAF2
Number of Residues9
Detailsbinding site for Di-peptide ALA Z 5 and ALO Z 6
ChainResidue
BARG290
JTYR198
JSER199
JPHE200
JGLU205
JGLN246
NTRP3
NG5G4
NCYS7

site_idAF3
Number of Residues8
Detailsbinding site for Di-peptide ALO Z 6 and CYS Z 7
ChainResidue
IASP179
JSER199
JPHE200
JGLU205
NHYP1
NALA2
NTRP3
NALA5

site_idAF4
Number of Residues6
Detailsbinding site for Di-peptide HYP a 1 and CYS a 7
ChainResidue
LGLU72
LHIC73
LASP179
QALA2
QTRP3
QALO6

site_idAF5
Number of Residues6
Detailsbinding site for Di-peptide HYP a 1 and ALA a 2
ChainResidue
LGLU72
LHIC73
LILE75
QTRP3
QG5G4
QCYS7

site_idAF6
Number of Residues8
Detailsbinding site for Di-peptide TRP a 3 and G5G a 4
ChainResidue
LILE75
LARG177
LASP179
QHYP1
QALA2
QALA5
QALO6
QCYS7

site_idAF7
Number of Residues3
Detailsbinding site for Di-peptide G5G a 4 and ALA a 5
ChainResidue
QALA2
QTRP3
QALO6

site_idAF8
Number of Residues3
Detailsbinding site for Di-peptide ALA a 5 and ALO a 6
ChainResidue
QTRP3
QG5G4
QCYS7

site_idAF9
Number of Residues6
Detailsbinding site for Di-peptide ALO a 6 and CYS a 7
ChainResidue
LHIC73
LASP179
QHYP1
QALA2
QTRP3
QALA5

site_idAG1
Number of Residues5
Detailsbinding site for Di-peptide HYP b 1 and ALA b 2
ChainResidue
KGLU72
KILE75
PTRP3
PG5G4
PCYS7

site_idAG2
Number of Residues5
Detailsbinding site for Di-peptide HYP b 1 and CYS b 7
ChainResidue
KGLU72
KASP179
PALA2
PTRP3
PALO6

site_idAG3
Number of Residues10
Detailsbinding site for Di-peptide TRP b 3 and G5G b 4
ChainResidue
KILE75
KARG177
LGLY197
LTYR198
LGLN246
PHYP1
PALA2
PALA5
PALO6
PCYS7

site_idAG4
Number of Residues5
Detailsbinding site for Di-peptide G5G b 4 and ALA b 5
ChainResidue
LGLY197
LGLN246
PALA2
PTRP3
PALO6

site_idAG5
Number of Residues6
Detailsbinding site for Di-peptide ALA b 5 and ALO b 6
ChainResidue
LSER199
LPHE200
LGLU205
PTRP3
PG5G4
PCYS7

site_idAG6
Number of Residues8
Detailsbinding site for Di-peptide ALO b 6 and CYS b 7
ChainResidue
KASP179
LSER199
LPHE200
LGLU205
PHYP1
PALA2
PTRP3
PALA5

Functional Information from PROSITE/UniProt
site_idPS00406
Number of Residues11
DetailsACTINS_1 Actins signature 1. YVGDEAQs.KRG
ChainResidueDetails
ITYR53-GLY63

site_idPS00432
Number of Residues9
DetailsACTINS_2 Actins signature 2. WITKqEYDE
ChainResidueDetails
ITRP356-GLU364

site_idPS01132
Number of Residues13
DetailsACTINS_ACT_LIKE Actins and actin-related proteins signature. LLTEApLNPkaNR
ChainResidueDetails
ILEU104-ARG116
BLEU104-ARG116
ALEU127-ARG139

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues10
DetailsCROSSLNK: 2'-cysteinyl-6'-hydroxytryptophan sulfoxide (Trp-Cys) => ECO:0000250|UniProtKB:P85421
ChainResidueDetails
MTRP3
QCYS7
MCYS7
NTRP3
NCYS7
OTRP3
OCYS7
PTRP3
PCYS7
QTRP3

site_idSWS_FT_FI2
Number of Residues4
DetailsMOD_RES: N-acetylaspartate; in Actin, alpha skeletal muscle => ECO:0000269|PubMed:1150665
ChainResidueDetails
IASP1
JASP1
KASP1
LASP1

site_idSWS_FT_FI3
Number of Residues8
DetailsMOD_RES: Methionine (R)-sulfoxide => ECO:0000250|UniProtKB:P68134
ChainResidueDetails
IMET44
IMET47
JMET44
JMET47
KMET44
KMET47
LMET44
LMET47

site_idSWS_FT_FI4
Number of Residues4
DetailsMOD_RES: N6-malonyllysine => ECO:0000250
ChainResidueDetails
ILYS61
JLYS61
KLYS61
LLYS61

site_idSWS_FT_FI5
Number of Residues4
DetailsMOD_RES: Tele-methylhistidine => ECO:0000269|PubMed:1150665, ECO:0000269|PubMed:16905096, ECO:0000269|PubMed:213279, ECO:0000269|PubMed:2395459, ECO:0000269|PubMed:499690, ECO:0007744|PDB:1ATN, ECO:0007744|PDB:1NWK
ChainResidueDetails
IHIC73
JHIC73
KHIC73
LHIC73

site_idSWS_FT_FI6
Number of Residues4
DetailsMOD_RES: N6-methyllysine => ECO:0000250|UniProtKB:P68133
ChainResidueDetails
ILYS84
JLYS84
KLYS84
LLYS84

site_idSWS_FT_FI7
Number of Residues4
DetailsMOD_RES: ADP-ribosylarginine; by SpvB => ECO:0000305|PubMed:16905096
ChainResidueDetails
IARG177
JARG177
KARG177
LARG177

223166

PDB entries from 2024-07-31

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