6VZ3

Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
0	0002181	biological_process	cytoplasmic translation
0	0003723	molecular_function	RNA binding
0	0003735	molecular_function	structural constituent of ribosome
0	0005737	cellular_component	cytoplasm
0	0005829	cellular_component	cytosol
0	0005840	cellular_component	ribosome
0	0006412	biological_process	translation
0	0019843	molecular_function	rRNA binding
0	0022625	cellular_component	cytosolic large ribosomal subunit
0	1990904	cellular_component	ribonucleoprotein complex
1	0002181	biological_process	cytoplasmic translation
1	0003735	molecular_function	structural constituent of ribosome
1	0005515	molecular_function	protein binding
1	0005737	cellular_component	cytoplasm
1	0005829	cellular_component	cytosol
1	0005840	cellular_component	ribosome
1	0006412	biological_process	translation
1	0015934	cellular_component	large ribosomal subunit
1	0019843	molecular_function	rRNA binding
1	0022625	cellular_component	cytosolic large ribosomal subunit
1	0042255	biological_process	ribosome assembly
1	0042256	biological_process	cytosolic ribosome assembly
1	0046677	biological_process	response to antibiotic
1	0070180	molecular_function	large ribosomal subunit rRNA binding
1	1902626	biological_process	assembly of large subunit precursor of preribosome
1	1990904	cellular_component	ribonucleoprotein complex
2	0000027	biological_process	ribosomal large subunit assembly
2	0002181	biological_process	cytoplasmic translation
2	0003735	molecular_function	structural constituent of ribosome
2	0005515	molecular_function	protein binding
2	0005737	cellular_component	cytoplasm
2	0005840	cellular_component	ribosome
2	0006412	biological_process	translation
2	0019843	molecular_function	rRNA binding
2	0022625	cellular_component	cytosolic large ribosomal subunit
2	1990904	cellular_component	ribonucleoprotein complex
3	0000027	biological_process	ribosomal large subunit assembly
3	0002181	biological_process	cytoplasmic translation
3	0003723	molecular_function	RNA binding
3	0003735	molecular_function	structural constituent of ribosome
3	0005515	molecular_function	protein binding
3	0005737	cellular_component	cytoplasm
3	0005829	cellular_component	cytosol
3	0005840	cellular_component	ribosome
3	0006412	biological_process	translation
3	0019843	molecular_function	rRNA binding
3	0022625	cellular_component	cytosolic large ribosomal subunit
3	0070180	molecular_function	large ribosomal subunit rRNA binding
3	1990904	cellular_component	ribonucleoprotein complex
4	0000027	biological_process	ribosomal large subunit assembly
4	0002181	biological_process	cytoplasmic translation
4	0003723	molecular_function	RNA binding
4	0003735	molecular_function	structural constituent of ribosome
4	0005737	cellular_component	cytoplasm
4	0005829	cellular_component	cytosol
4	0005840	cellular_component	ribosome
4	0006412	biological_process	translation
4	0008097	molecular_function	5S rRNA binding
4	0009314	biological_process	response to radiation
4	0017148	biological_process	negative regulation of translation
4	0019843	molecular_function	rRNA binding
4	0022625	cellular_component	cytosolic large ribosomal subunit
4	1990904	cellular_component	ribonucleoprotein complex
AA	0000345	cellular_component	cytosolic DNA-directed RNA polymerase complex
AA	0000428	cellular_component	DNA-directed RNA polymerase complex
AA	0001054	molecular_function	RNA polymerase I activity
AA	0001055	molecular_function	RNA polymerase II activity
AA	0001056	molecular_function	RNA polymerase III activity
AA	0001057	molecular_function	RNA polymerase IV activity
AA	0001058	molecular_function	RNA polymerase V activity
AA	0001059	biological_process	transcription by RNA polymerase IV
AA	0001060	biological_process	transcription by RNA polymerase V
AA	0001066	molecular_function	plastid single subunit type RNA polymerase activity
AA	0003677	molecular_function	DNA binding
AA	0003899	molecular_function	DNA-directed 5'-3' RNA polymerase activity
AA	0005515	molecular_function	protein binding
AA	0005737	cellular_component	cytoplasm
AA	0005829	cellular_component	cytosol
AA	0006351	biological_process	DNA-templated transcription
AA	0006352	biological_process	DNA-templated transcription initiation
AA	0006360	biological_process	transcription by RNA polymerase I
AA	0006366	biological_process	transcription by RNA polymerase II
AA	0006383	biological_process	transcription by RNA polymerase III
AA	0006879	biological_process	intracellular iron ion homeostasis
AA	0008023	cellular_component	transcription elongation factor complex
AA	0009408	biological_process	response to heat
AA	0016020	cellular_component	membrane
AA	0016779	molecular_function	nucleotidyltransferase activity
AA	0031564	biological_process	transcription antitermination
AA	0032549	molecular_function	ribonucleoside binding
AA	0032784	biological_process	regulation of DNA-templated transcription elongation
AA	0034062	molecular_function	5'-3' RNA polymerase activity
AA	0036460	biological_process	cellular response to cell envelope stress
AA	0042128	biological_process	nitrate assimilation
AA	0042793	biological_process	plastid transcription
AA	0044780	biological_process	bacterial-type flagellum assembly
AA	0046677	biological_process	response to antibiotic
AA	0048870	biological_process	cell motility
AA	0071973	biological_process	bacterial-type flagellum-dependent cell motility
AA	0090605	biological_process	submerged biofilm formation
AA	2000142	biological_process	regulation of DNA-templated transcription initiation
AB	0006354	biological_process	DNA-templated transcription elongation
AB	0140673	biological_process	transcription elongation-coupled chromatin remodeling
AC	0003677	molecular_function	DNA binding
AC	0003899	molecular_function	DNA-directed 5'-3' RNA polymerase activity
AC	0006351	biological_process	DNA-templated transcription
AC	0046983	molecular_function	protein dimerization activity
AD	0003677	molecular_function	DNA binding
AD	0003899	molecular_function	DNA-directed 5'-3' RNA polymerase activity
AD	0006351	biological_process	DNA-templated transcription
AD	0046983	molecular_function	protein dimerization activity
AE	0000287	molecular_function	magnesium ion binding
AE	0000345	cellular_component	cytosolic DNA-directed RNA polymerase complex
AE	0000428	cellular_component	DNA-directed RNA polymerase complex
AE	0001054	molecular_function	RNA polymerase I activity
AE	0001055	molecular_function	RNA polymerase II activity
AE	0001056	molecular_function	RNA polymerase III activity
AE	0001057	molecular_function	RNA polymerase IV activity
AE	0001058	molecular_function	RNA polymerase V activity
AE	0001059	biological_process	transcription by RNA polymerase IV
AE	0001060	biological_process	transcription by RNA polymerase V
AE	0001066	molecular_function	plastid single subunit type RNA polymerase activity
AE	0003677	molecular_function	DNA binding
AE	0003899	molecular_function	DNA-directed 5'-3' RNA polymerase activity
AE	0005515	molecular_function	protein binding
AE	0005737	cellular_component	cytoplasm
AE	0005829	cellular_component	cytosol
AE	0006351	biological_process	DNA-templated transcription
AE	0006352	biological_process	DNA-templated transcription initiation
AE	0006360	biological_process	transcription by RNA polymerase I
AE	0006366	biological_process	transcription by RNA polymerase II
AE	0006383	biological_process	transcription by RNA polymerase III
AE	0006879	biological_process	intracellular iron ion homeostasis
AE	0008023	cellular_component	transcription elongation factor complex
AE	0008270	molecular_function	zinc ion binding
AE	0009408	biological_process	response to heat
AE	0016020	cellular_component	membrane
AE	0016779	molecular_function	nucleotidyltransferase activity
AE	0031564	biological_process	transcription antitermination
AE	0032784	biological_process	regulation of DNA-templated transcription elongation
AE	0034062	molecular_function	5'-3' RNA polymerase activity
AE	0036460	biological_process	cellular response to cell envelope stress
AE	0042128	biological_process	nitrate assimilation
AE	0042793	biological_process	plastid transcription
AE	0044780	biological_process	bacterial-type flagellum assembly
AE	0046677	biological_process	response to antibiotic
AE	0046872	molecular_function	metal ion binding
AE	0048870	biological_process	cell motility
AE	0071973	biological_process	bacterial-type flagellum-dependent cell motility
AE	0090605	biological_process	submerged biofilm formation
AE	2000142	biological_process	regulation of DNA-templated transcription initiation
AF	0000345	cellular_component	cytosolic DNA-directed RNA polymerase complex
AF	0000428	cellular_component	DNA-directed RNA polymerase complex
AF	0001000	molecular_function	bacterial-type RNA polymerase core enzyme binding
AF	0001054	molecular_function	RNA polymerase I activity
AF	0001055	molecular_function	RNA polymerase II activity
AF	0001056	molecular_function	RNA polymerase III activity
AF	0001057	molecular_function	RNA polymerase IV activity
AF	0001058	molecular_function	RNA polymerase V activity
AF	0001059	biological_process	transcription by RNA polymerase IV
AF	0001060	biological_process	transcription by RNA polymerase V
AF	0001066	molecular_function	plastid single subunit type RNA polymerase activity
AF	0003677	molecular_function	DNA binding
AF	0003899	molecular_function	DNA-directed 5'-3' RNA polymerase activity
AF	0005829	cellular_component	cytosol
AF	0006351	biological_process	DNA-templated transcription
AF	0006352	biological_process	DNA-templated transcription initiation
AF	0006360	biological_process	transcription by RNA polymerase I
AF	0006366	biological_process	transcription by RNA polymerase II
AF	0006383	biological_process	transcription by RNA polymerase III
AF	0006879	biological_process	intracellular iron ion homeostasis
AF	0008023	cellular_component	transcription elongation factor complex
AF	0009408	biological_process	response to heat
AF	0016779	molecular_function	nucleotidyltransferase activity
AF	0030880	cellular_component	RNA polymerase complex
AF	0031564	biological_process	transcription antitermination
AF	0032784	biological_process	regulation of DNA-templated transcription elongation
AF	0034062	molecular_function	5'-3' RNA polymerase activity
AF	0036460	biological_process	cellular response to cell envelope stress
AF	0042128	biological_process	nitrate assimilation
AF	0042793	biological_process	plastid transcription
AF	0044780	biological_process	bacterial-type flagellum assembly
AF	0048870	biological_process	cell motility
AF	0065003	biological_process	protein-containing complex assembly
AF	0071973	biological_process	bacterial-type flagellum-dependent cell motility
AF	0090605	biological_process	submerged biofilm formation
AF	2000142	biological_process	regulation of DNA-templated transcription initiation
C	0003735	molecular_function	structural constituent of ribosome
C	0005840	cellular_component	ribosome
C	0006412	biological_process	translation
E	0000028	biological_process	ribosomal small subunit assembly
E	0002181	biological_process	cytoplasmic translation
E	0003723	molecular_function	RNA binding
E	0003735	molecular_function	structural constituent of ribosome
E	0005737	cellular_component	cytoplasm
E	0005829	cellular_component	cytosol
E	0005840	cellular_component	ribosome
E	0006412	biological_process	translation
E	0008073	molecular_function	ornithine decarboxylase inhibitor activity
E	0015935	cellular_component	small ribosomal subunit
E	0019843	molecular_function	rRNA binding
E	0022627	cellular_component	cytosolic small ribosomal subunit
E	0070181	molecular_function	small ribosomal subunit rRNA binding
E	1990904	cellular_component	ribonucleoprotein complex
F	0000028	biological_process	ribosomal small subunit assembly
F	0002181	biological_process	cytoplasmic translation
F	0003735	molecular_function	structural constituent of ribosome
F	0005737	cellular_component	cytoplasm
F	0005829	cellular_component	cytosol
F	0005840	cellular_component	ribosome
F	0006412	biological_process	translation
F	0019843	molecular_function	rRNA binding
F	0022627	cellular_component	cytosolic small ribosomal subunit
F	1990904	cellular_component	ribonucleoprotein complex
G	0000028	biological_process	ribosomal small subunit assembly
G	0002181	biological_process	cytoplasmic translation
G	0003735	molecular_function	structural constituent of ribosome
G	0005515	molecular_function	protein binding
G	0005737	cellular_component	cytoplasm
G	0005840	cellular_component	ribosome
G	0006412	biological_process	translation
G	0008270	molecular_function	zinc ion binding
G	0015935	cellular_component	small ribosomal subunit
G	0022627	cellular_component	cytosolic small ribosomal subunit
G	1990904	cellular_component	ribonucleoprotein complex
H	0003676	molecular_function	nucleic acid binding
I	0003676	molecular_function	nucleic acid binding
I	0003723	molecular_function	RNA binding
I	0003735	molecular_function	structural constituent of ribosome
I	0006412	biological_process	translation
J	0000028	biological_process	ribosomal small subunit assembly
J	0000900	molecular_function	mRNA regulatory element binding translation repressor activity
J	0002181	biological_process	cytoplasmic translation
J	0003723	molecular_function	RNA binding
J	0003735	molecular_function	structural constituent of ribosome
J	0005515	molecular_function	protein binding
J	0005737	cellular_component	cytoplasm
J	0005829	cellular_component	cytosol
J	0005840	cellular_component	ribosome
J	0006353	biological_process	DNA-templated transcription termination
J	0006412	biological_process	translation
J	0006417	biological_process	regulation of translation
J	0015935	cellular_component	small ribosomal subunit
J	0019843	molecular_function	rRNA binding
J	0022627	cellular_component	cytosolic small ribosomal subunit
J	0031564	biological_process	transcription antitermination
J	0042254	biological_process	ribosome biogenesis
J	0042274	biological_process	ribosomal small subunit biogenesis
J	0045947	biological_process	negative regulation of translational initiation
J	0046677	biological_process	response to antibiotic
J	0048027	molecular_function	mRNA 5'-UTR binding
J	1990145	biological_process	maintenance of translational fidelity
J	1990904	cellular_component	ribonucleoprotein complex
K	0000028	biological_process	ribosomal small subunit assembly
K	0002181	biological_process	cytoplasmic translation
K	0003723	molecular_function	RNA binding
K	0003735	molecular_function	structural constituent of ribosome
K	0005515	molecular_function	protein binding
K	0005737	cellular_component	cytoplasm
K	0005829	cellular_component	cytosol
K	0005840	cellular_component	ribosome
K	0006412	biological_process	translation
K	0015935	cellular_component	small ribosomal subunit
K	0019843	molecular_function	rRNA binding
K	0022627	cellular_component	cytosolic small ribosomal subunit
K	0046677	biological_process	response to antibiotic
K	1990145	biological_process	maintenance of translational fidelity
K	1990904	cellular_component	ribonucleoprotein complex
L	0003735	molecular_function	structural constituent of ribosome
L	0005840	cellular_component	ribosome
L	0006412	biological_process	translation
L	0019843	molecular_function	rRNA binding
M	0003723	molecular_function	RNA binding
M	0003735	molecular_function	structural constituent of ribosome
M	0006412	biological_process	translation
M	0015935	cellular_component	small ribosomal subunit
N	0000028	biological_process	ribosomal small subunit assembly
N	0002181	biological_process	cytoplasmic translation
N	0003735	molecular_function	structural constituent of ribosome
N	0005737	cellular_component	cytoplasm
N	0005829	cellular_component	cytosol
N	0005840	cellular_component	ribosome
N	0006412	biological_process	translation
N	0006417	biological_process	regulation of translation
N	0019843	molecular_function	rRNA binding
N	0022627	cellular_component	cytosolic small ribosomal subunit
N	0043488	biological_process	regulation of mRNA stability
N	1990904	cellular_component	ribonucleoprotein complex
O	0000049	molecular_function	tRNA binding
O	0002181	biological_process	cytoplasmic translation
O	0003723	molecular_function	RNA binding
O	0003735	molecular_function	structural constituent of ribosome
O	0005737	cellular_component	cytoplasm
O	0005829	cellular_component	cytosol
O	0005840	cellular_component	ribosome
O	0006412	biological_process	translation
O	0022627	cellular_component	cytosolic small ribosomal subunit
O	0043232	cellular_component	intracellular non-membrane-bounded organelle
O	1990904	cellular_component	ribonucleoprotein complex
P	0000049	molecular_function	tRNA binding
P	0001072	molecular_function	transcription antitermination factor activity, RNA binding
P	0002181	biological_process	cytoplasmic translation
P	0003723	molecular_function	RNA binding
P	0003735	molecular_function	structural constituent of ribosome
P	0005515	molecular_function	protein binding
P	0005737	cellular_component	cytoplasm
P	0005829	cellular_component	cytosol
P	0005840	cellular_component	ribosome
P	0006412	biological_process	translation
P	0008023	cellular_component	transcription elongation factor complex
P	0015935	cellular_component	small ribosomal subunit
P	0022627	cellular_component	cytosolic small ribosomal subunit
P	0031564	biological_process	transcription antitermination
P	0032784	biological_process	regulation of DNA-templated transcription elongation
P	0042254	biological_process	ribosome biogenesis
P	1990904	cellular_component	ribonucleoprotein complex
Q	0002181	biological_process	cytoplasmic translation
Q	0003735	molecular_function	structural constituent of ribosome
Q	0005515	molecular_function	protein binding
Q	0005737	cellular_component	cytoplasm
Q	0005829	cellular_component	cytosol
Q	0005840	cellular_component	ribosome
Q	0006412	biological_process	translation
Q	0019843	molecular_function	rRNA binding
Q	0022627	cellular_component	cytosolic small ribosomal subunit
Q	0070181	molecular_function	small ribosomal subunit rRNA binding
Q	1990904	cellular_component	ribonucleoprotein complex
R	0000049	molecular_function	tRNA binding
R	0000372	biological_process	Group I intron splicing
R	0002181	biological_process	cytoplasmic translation
R	0003735	molecular_function	structural constituent of ribosome
R	0005515	molecular_function	protein binding
R	0005737	cellular_component	cytoplasm
R	0005829	cellular_component	cytosol
R	0005840	cellular_component	ribosome
R	0006412	biological_process	translation
R	0015935	cellular_component	small ribosomal subunit
R	0019843	molecular_function	rRNA binding
R	0022627	cellular_component	cytosolic small ribosomal subunit
R	0033120	biological_process	positive regulation of RNA splicing
R	0034336	molecular_function	misfolded RNA binding
R	0034337	biological_process	RNA folding
R	0046677	biological_process	response to antibiotic
R	1990145	biological_process	maintenance of translational fidelity
R	1990904	cellular_component	ribonucleoprotein complex
S	0000028	biological_process	ribosomal small subunit assembly
S	0000049	molecular_function	tRNA binding
S	0002181	biological_process	cytoplasmic translation
S	0003735	molecular_function	structural constituent of ribosome
S	0005737	cellular_component	cytoplasm
S	0005840	cellular_component	ribosome
S	0006412	biological_process	translation
S	0015935	cellular_component	small ribosomal subunit
S	0019843	molecular_function	rRNA binding
S	0022627	cellular_component	cytosolic small ribosomal subunit
S	1990904	cellular_component	ribonucleoprotein complex
T	0000028	biological_process	ribosomal small subunit assembly
T	0002181	biological_process	cytoplasmic translation
T	0003735	molecular_function	structural constituent of ribosome
T	0005737	cellular_component	cytoplasm
T	0005829	cellular_component	cytosol
T	0005840	cellular_component	ribosome
T	0006412	biological_process	translation
T	0006417	biological_process	regulation of translation
T	0019843	molecular_function	rRNA binding
T	0022627	cellular_component	cytosolic small ribosomal subunit
T	0070181	molecular_function	small ribosomal subunit rRNA binding
T	1990904	cellular_component	ribonucleoprotein complex
U	0000028	biological_process	ribosomal small subunit assembly
U	0000400	molecular_function	four-way junction DNA binding
U	0002181	biological_process	cytoplasmic translation
U	0003735	molecular_function	structural constituent of ribosome
U	0004519	molecular_function	endonuclease activity
U	0004520	molecular_function	DNA endonuclease activity
U	0005737	cellular_component	cytoplasm
U	0005840	cellular_component	ribosome
U	0006259	biological_process	DNA metabolic process
U	0006412	biological_process	translation
U	0015935	cellular_component	small ribosomal subunit
U	0022627	cellular_component	cytosolic small ribosomal subunit
U	1990904	cellular_component	ribonucleoprotein complex
V	0000028	biological_process	ribosomal small subunit assembly
V	0002181	biological_process	cytoplasmic translation
V	0003735	molecular_function	structural constituent of ribosome
V	0005737	cellular_component	cytoplasm
V	0005840	cellular_component	ribosome
V	0006412	biological_process	translation
V	0008270	molecular_function	zinc ion binding
V	0019843	molecular_function	rRNA binding
V	0022627	cellular_component	cytosolic small ribosomal subunit
V	0046677	biological_process	response to antibiotic
V	0070181	molecular_function	small ribosomal subunit rRNA binding
V	1990904	cellular_component	ribonucleoprotein complex
W	0000028	biological_process	ribosomal small subunit assembly
W	0000049	molecular_function	tRNA binding
W	0002181	biological_process	cytoplasmic translation
W	0003723	molecular_function	RNA binding
W	0003735	molecular_function	structural constituent of ribosome
W	0005737	cellular_component	cytoplasm
W	0005829	cellular_component	cytosol
W	0005840	cellular_component	ribosome
W	0006412	biological_process	translation
W	0015935	cellular_component	small ribosomal subunit
W	0019843	molecular_function	rRNA binding
W	0022627	cellular_component	cytosolic small ribosomal subunit
W	1990904	cellular_component	ribonucleoprotein complex
X	0000049	molecular_function	tRNA binding
X	0002181	biological_process	cytoplasmic translation
X	0003676	molecular_function	nucleic acid binding
X	0003723	molecular_function	RNA binding
X	0003735	molecular_function	structural constituent of ribosome
X	0005515	molecular_function	protein binding
X	0005737	cellular_component	cytoplasm
X	0005829	cellular_component	cytosol
X	0005840	cellular_component	ribosome
X	0006412	biological_process	translation
X	0015935	cellular_component	small ribosomal subunit
X	0019843	molecular_function	rRNA binding
X	0022627	cellular_component	cytosolic small ribosomal subunit
X	1990904	cellular_component	ribonucleoprotein complex
b	0003735	molecular_function	structural constituent of ribosome
b	0005840	cellular_component	ribosome
b	0006412	biological_process	translation
c	0000027	biological_process	ribosomal large subunit assembly
c	0002181	biological_process	cytoplasmic translation
c	0003735	molecular_function	structural constituent of ribosome
c	0005515	molecular_function	protein binding
c	0005737	cellular_component	cytoplasm
c	0005829	cellular_component	cytosol
c	0005840	cellular_component	ribosome
c	0006412	biological_process	translation
c	0019843	molecular_function	rRNA binding
c	0022625	cellular_component	cytosolic large ribosomal subunit
c	1990904	cellular_component	ribonucleoprotein complex
e	0000027	biological_process	ribosomal large subunit assembly
e	0002181	biological_process	cytoplasmic translation
e	0003735	molecular_function	structural constituent of ribosome
e	0005737	cellular_component	cytoplasm
e	0005840	cellular_component	ribosome
e	0006412	biological_process	translation
e	0019843	molecular_function	rRNA binding
e	0022625	cellular_component	cytosolic large ribosomal subunit
e	1990904	cellular_component	ribonucleoprotein complex
f	0000027	biological_process	ribosomal large subunit assembly
f	0002181	biological_process	cytoplasmic translation
f	0003735	molecular_function	structural constituent of ribosome
f	0005737	cellular_component	cytoplasm
f	0005840	cellular_component	ribosome
f	0006412	biological_process	translation
f	0015934	cellular_component	large ribosomal subunit
f	0022625	cellular_component	cytosolic large ribosomal subunit
f	1990904	cellular_component	ribonucleoprotein complex
g	0002181	biological_process	cytoplasmic translation
g	0003735	molecular_function	structural constituent of ribosome
g	0005737	cellular_component	cytoplasm
g	0005829	cellular_component	cytosol
g	0005840	cellular_component	ribosome
g	0006412	biological_process	translation
g	0006413	biological_process	translational initiation
g	0008270	molecular_function	zinc ion binding
g	0019843	molecular_function	rRNA binding
g	0022625	cellular_component	cytosolic large ribosomal subunit
g	0046872	molecular_function	metal ion binding
g	1904689	biological_process	negative regulation of cytoplasmic translational initiation
g	1990904	cellular_component	ribonucleoprotein complex
h	0000027	biological_process	ribosomal large subunit assembly
h	0002181	biological_process	cytoplasmic translation
h	0003723	molecular_function	RNA binding
h	0003735	molecular_function	structural constituent of ribosome
h	0005515	molecular_function	protein binding
h	0005737	cellular_component	cytoplasm
h	0005829	cellular_component	cytosol
h	0005840	cellular_component	ribosome
h	0006412	biological_process	translation
h	0008270	molecular_function	zinc ion binding
h	0015934	cellular_component	large ribosomal subunit
h	0016740	molecular_function	transferase activity
h	0019843	molecular_function	rRNA binding
h	0022625	cellular_component	cytosolic large ribosomal subunit
h	0032297	biological_process	negative regulation of DNA-templated DNA replication initiation
h	1990082	cellular_component	DnaA-L2 complex
h	1990904	cellular_component	ribonucleoprotein complex
i	0000027	biological_process	ribosomal large subunit assembly
i	0000302	biological_process	response to reactive oxygen species
i	0002181	biological_process	cytoplasmic translation
i	0003735	molecular_function	structural constituent of ribosome
i	0005515	molecular_function	protein binding
i	0005737	cellular_component	cytoplasm
i	0005829	cellular_component	cytosol
i	0005840	cellular_component	ribosome
i	0006412	biological_process	translation
i	0009314	biological_process	response to radiation
i	0015934	cellular_component	large ribosomal subunit
i	0022625	cellular_component	cytosolic large ribosomal subunit
i	1990904	cellular_component	ribonucleoprotein complex
j	0000027	biological_process	ribosomal large subunit assembly
j	0002181	biological_process	cytoplasmic translation
j	0003735	molecular_function	structural constituent of ribosome
j	0005515	molecular_function	protein binding
j	0005737	cellular_component	cytoplasm
j	0005829	cellular_component	cytosol
j	0005840	cellular_component	ribosome
j	0006412	biological_process	translation
j	0019843	molecular_function	rRNA binding
j	0022625	cellular_component	cytosolic large ribosomal subunit
j	1990904	cellular_component	ribonucleoprotein complex
k	0000027	biological_process	ribosomal large subunit assembly
k	0000049	molecular_function	tRNA binding
k	0002181	biological_process	cytoplasmic translation
k	0003735	molecular_function	structural constituent of ribosome
k	0005737	cellular_component	cytoplasm
k	0005829	cellular_component	cytosol
k	0005840	cellular_component	ribosome
k	0006412	biological_process	translation
k	0022625	cellular_component	cytosolic large ribosomal subunit
k	0046677	biological_process	response to antibiotic
k	1990904	cellular_component	ribonucleoprotein complex
l	0001070	molecular_function	RNA-binding transcription regulator activity
l	0002181	biological_process	cytoplasmic translation
l	0003677	molecular_function	DNA binding
l	0003735	molecular_function	structural constituent of ribosome
l	0005515	molecular_function	protein binding
l	0005737	cellular_component	cytoplasm
l	0005829	cellular_component	cytosol
l	0005840	cellular_component	ribosome
l	0006353	biological_process	DNA-templated transcription termination
l	0006412	biological_process	translation
l	0006417	biological_process	regulation of translation
l	0015934	cellular_component	large ribosomal subunit
l	0017148	biological_process	negative regulation of translation
l	0019843	molecular_function	rRNA binding
l	0022625	cellular_component	cytosolic large ribosomal subunit
l	0030371	molecular_function	translation repressor activity
l	0031555	biological_process	transcriptional attenuation
l	0042255	biological_process	ribosome assembly
l	0045892	biological_process	negative regulation of DNA-templated transcription
l	0046677	biological_process	response to antibiotic
l	0048027	molecular_function	mRNA 5'-UTR binding
l	0060698	molecular_function	endoribonuclease inhibitor activity
l	1990904	cellular_component	ribonucleoprotein complex
l	2000766	biological_process	negative regulation of cytoplasmic translation
m	0002181	biological_process	cytoplasmic translation
m	0003735	molecular_function	structural constituent of ribosome
m	0005515	molecular_function	protein binding
m	0005737	cellular_component	cytoplasm
m	0005840	cellular_component	ribosome
m	0006412	biological_process	translation
m	0022625	cellular_component	cytosolic large ribosomal subunit
m	1990904	cellular_component	ribonucleoprotein complex
n	0000027	biological_process	ribosomal large subunit assembly
n	0000049	molecular_function	tRNA binding
n	0002181	biological_process	cytoplasmic translation
n	0003723	molecular_function	RNA binding
n	0003735	molecular_function	structural constituent of ribosome
n	0005737	cellular_component	cytoplasm
n	0005829	cellular_component	cytosol
n	0005840	cellular_component	ribosome
n	0006412	biological_process	translation
n	0008097	molecular_function	5S rRNA binding
n	0019843	molecular_function	rRNA binding
n	0022625	cellular_component	cytosolic large ribosomal subunit
n	1990904	cellular_component	ribonucleoprotein complex
o	0002181	biological_process	cytoplasmic translation
o	0003735	molecular_function	structural constituent of ribosome
o	0005737	cellular_component	cytoplasm
o	0005840	cellular_component	ribosome
o	0006412	biological_process	translation
o	0022625	cellular_component	cytosolic large ribosomal subunit
o	1990904	cellular_component	ribonucleoprotein complex
p	0000027	biological_process	ribosomal large subunit assembly
p	0002181	biological_process	cytoplasmic translation
p	0003735	molecular_function	structural constituent of ribosome
p	0005737	cellular_component	cytoplasm
p	0005829	cellular_component	cytosol
p	0005840	cellular_component	ribosome
p	0006412	biological_process	translation
p	0019843	molecular_function	rRNA binding
p	0022625	cellular_component	cytosolic large ribosomal subunit
p	0046677	biological_process	response to antibiotic
p	0070180	molecular_function	large ribosomal subunit rRNA binding
p	1990904	cellular_component	ribonucleoprotein complex
q	0002181	biological_process	cytoplasmic translation
q	0003735	molecular_function	structural constituent of ribosome
q	0005737	cellular_component	cytoplasm
q	0005840	cellular_component	ribosome
q	0006412	biological_process	translation
q	0019843	molecular_function	rRNA binding
q	0022625	cellular_component	cytosolic large ribosomal subunit
q	1990904	cellular_component	ribonucleoprotein complex
r	0002181	biological_process	cytoplasmic translation
r	0003735	molecular_function	structural constituent of ribosome
r	0005515	molecular_function	protein binding
r	0005737	cellular_component	cytoplasm
r	0005829	cellular_component	cytosol
r	0005840	cellular_component	ribosome
r	0006412	biological_process	translation
r	0019843	molecular_function	rRNA binding
r	0022625	cellular_component	cytosolic large ribosomal subunit
r	0070180	molecular_function	large ribosomal subunit rRNA binding
r	1990904	cellular_component	ribonucleoprotein complex
s	0002181	biological_process	cytoplasmic translation
s	0003729	molecular_function	mRNA binding
s	0003735	molecular_function	structural constituent of ribosome
s	0005737	cellular_component	cytoplasm
s	0005829	cellular_component	cytosol
s	0005840	cellular_component	ribosome
s	0006412	biological_process	translation
s	0008270	molecular_function	zinc ion binding
s	0017148	biological_process	negative regulation of translation
s	0022625	cellular_component	cytosolic large ribosomal subunit
s	0048027	molecular_function	mRNA 5'-UTR binding
s	0070180	molecular_function	large ribosomal subunit rRNA binding
s	1990904	cellular_component	ribonucleoprotein complex
t	0002181	biological_process	cytoplasmic translation
t	0003735	molecular_function	structural constituent of ribosome
t	0005515	molecular_function	protein binding
t	0005737	cellular_component	cytoplasm
t	0005829	cellular_component	cytosol
t	0005840	cellular_component	ribosome
t	0006412	biological_process	translation
t	0015934	cellular_component	large ribosomal subunit
t	0019843	molecular_function	rRNA binding
t	0022625	cellular_component	cytosolic large ribosomal subunit
t	0070180	molecular_function	large ribosomal subunit rRNA binding
t	1990904	cellular_component	ribonucleoprotein complex
u	0002181	biological_process	cytoplasmic translation
u	0003735	molecular_function	structural constituent of ribosome
u	0005515	molecular_function	protein binding
u	0005737	cellular_component	cytoplasm
u	0005840	cellular_component	ribosome
u	0006412	biological_process	translation
u	0015934	cellular_component	large ribosomal subunit
u	0019843	molecular_function	rRNA binding
u	0022625	cellular_component	cytosolic large ribosomal subunit
u	1990904	cellular_component	ribonucleoprotein complex
v	0000027	biological_process	ribosomal large subunit assembly
v	0000049	molecular_function	tRNA binding
v	0002181	biological_process	cytoplasmic translation
v	0003735	molecular_function	structural constituent of ribosome
v	0005737	cellular_component	cytoplasm
v	0005840	cellular_component	ribosome
v	0006412	biological_process	translation
v	0019843	molecular_function	rRNA binding
v	0022625	cellular_component	cytosolic large ribosomal subunit
v	1990904	cellular_component	ribonucleoprotein complex
w	0000027	biological_process	ribosomal large subunit assembly
w	0002181	biological_process	cytoplasmic translation
w	0003735	molecular_function	structural constituent of ribosome
w	0005515	molecular_function	protein binding
w	0005737	cellular_component	cytoplasm
w	0005829	cellular_component	cytosol
w	0005840	cellular_component	ribosome
w	0006412	biological_process	translation
w	0022625	cellular_component	cytosolic large ribosomal subunit
w	1990904	cellular_component	ribonucleoprotein complex
x	0002181	biological_process	cytoplasmic translation
x	0003735	molecular_function	structural constituent of ribosome
x	0005737	cellular_component	cytoplasm
x	0005829	cellular_component	cytosol
x	0005840	cellular_component	ribosome
x	0006412	biological_process	translation
x	0008097	molecular_function	5S rRNA binding
x	0019843	molecular_function	rRNA binding
x	0022625	cellular_component	cytosolic large ribosomal subunit
x	1990904	cellular_component	ribonucleoprotein complex
y	0000027	biological_process	ribosomal large subunit assembly
y	0002181	biological_process	cytoplasmic translation
y	0003735	molecular_function	structural constituent of ribosome
y	0005737	cellular_component	cytoplasm
y	0005829	cellular_component	cytosol
y	0005840	cellular_component	ribosome
y	0006412	biological_process	translation
y	0019843	molecular_function	rRNA binding
y	0022625	cellular_component	cytosolic large ribosomal subunit
y	0070180	molecular_function	large ribosomal subunit rRNA binding
y	1990904	cellular_component	ribonucleoprotein complex
z	0000027	biological_process	ribosomal large subunit assembly
z	0000900	molecular_function	mRNA regulatory element binding translation repressor activity
z	0002181	biological_process	cytoplasmic translation
z	0003729	molecular_function	mRNA binding
z	0003735	molecular_function	structural constituent of ribosome
z	0005737	cellular_component	cytoplasm
z	0005829	cellular_component	cytosol
z	0005840	cellular_component	ribosome
z	0006412	biological_process	translation
z	0017148	biological_process	negative regulation of translation
z	0019843	molecular_function	rRNA binding
z	0022625	cellular_component	cytosolic large ribosomal subunit
z	0070180	molecular_function	large ribosomal subunit rRNA binding
z	1990904	cellular_component	ribonucleoprotein complex

Functional Information from PDB Data

site_id	AC1
Number of Residues	3
Details	binding site for residue MG 7 1501

Chain	Residue
7	G70
AE	ASP460
AE	ASP462

---

site_id	AC2
Number of Residues	4
Details	binding site for residue ZN AE 1401

Chain	Residue
AE	CYS70
AE	LYS74
AE	CYS85
AE	CYS88

---

site_id	AC3
Number of Residues	5
Details	binding site for residue ZN AE 1402

Chain	Residue
AE	ASP889
AE	CYS895
AE	CYS898
AE	CYS814
AE	CYS888

---

Functional Information from PROSITE/UniProt

site_id	PS00049
Number of Residues	27
Details	RIBOSOMAL_L14 Ribosomal protein L14 signature. AVVVrtkkgvrrp.DGsvirFdgNacVL

Chain	Residue	Details
t	ALA60-LEU86

---

site_id	PS00052
Number of Residues	27
Details	RIBOSOMAL_S7 Ribosomal protein S7 signature. SeLlakFVnilmvdGKKstaesIVysA

Chain	Residue	Details
M	SER20-ALA46

---

site_id	PS00053
Number of Residues	18
Details	RIBOSOMAL_S8 Ribosomal protein S8 signature. GiaVVSTSkGVMtdraAR

Chain	Residue	Details
N	GLY100-ARG117

---

site_id	PS00054
Number of Residues	23
Details	RIBOSOMAL_S11 Ribosomal protein S11 signature. IrALnaA.GFrItnitDvTPiPHN

Chain	Residue	Details
Q	ILE97-ASN119

---

site_id	PS00055
Number of Residues	8
Details	RIBOSOMAL_S12 Ribosomal protein S12 signature. KkPNSAlR

Chain	Residue	Details
R	LYS43-ARG50

---

site_id	PS00056
Number of Residues	13
Details	RIBOSOMAL_S17 Ribosomal protein S17 signature. GDvVeIrEcRPLS

Chain	Residue	Details
V	GLY56-SER68

---

site_id	PS00057
Number of Residues	24
Details	RIBOSOMAL_S18 Ribosomal protein S18 signature. IDYkd.IatLknYITEs.GKIvpsRI

Chain	Residue	Details
C	ILE21-ILE44

---

site_id	PS00061
Number of Residues	29
Details	ADH_SHORT Short-chain dehydrogenases/reductases family signature. PdhkhavialTsiYGVGKTRSkAILaAAG

Chain	Residue	Details
X	PRO10-GLY38

---

site_id	PS00323
Number of Residues	25
Details	RIBOSOMAL_S19 Ribosomal protein S19 signature. NGRqhvpvfVtdemVGhkLGEFapT

Chain	Residue	Details
W	ASN53-THR77

---

site_id	PS00358
Number of Residues	17
Details	RIBOSOMAL_L5 Ribosomal protein L5 signature. LaaISGQkpLiTkARkS

Chain	Residue	Details
n	LEU57-SER73

---

site_id	PS00360
Number of Residues	19
Details	RIBOSOMAL_S9 Ribosomal protein S9 signature. GGGisGQagAirhGiTRAL

Chain	Residue	Details
O	GLY69-LEU87

---

site_id	PS00361
Number of Residues	16
Details	RIBOSOMAL_S10 Ribosomal protein S10 signature. AkrtGAqvrGPIpLPT

Chain	Residue	Details
P	ALA29-THR44

---

site_id	PS00362
Number of Residues	31
Details	RIBOSOMAL_S15 Ribosomal protein S15 signature. LqgHFaehKkDhhSrrgLlrMvsqrrkLldY

Chain	Residue	Details
T	LEU39-TYR69

---

site_id	PS00430
Number of Residues	66
Details	TONB_DEPENDENT_REC_1 TonB-dependent receptor (TBDR) proteins signature 1. mireerllkvlraphvsekastameksntivlkvakdatkaeikaavqklfevevevv.........................................................NTLVVKGK

Chain	Residue	Details
2	MET1-LYS66

---

site_id	PS00464
Number of Residues	25
Details	RIBOSOMAL_L22 Ribosomal protein L22 signature. KriMpRAkGRadrilkrtSHITVvV

Chain	Residue	Details
1	LYS83-VAL107

---

site_id	PS00467
Number of Residues	12
Details	RIBOSOMAL_L2 Ribosomal protein L2 signature. PtvRGTAmNPvD

Chain	Residue	Details
h	PRO218-ASP229

---

site_id	PS00474
Number of Residues	24
Details	RIBOSOMAL_L3 Ribosomal protein L3 signature. FadvkkvDvtGtSkGKGfaGtvkR

Chain	Residue	Details
j	PHE101-ARG124

---

site_id	PS00475
Number of Residues	31
Details	RIBOSOMAL_L15 Ribosomal protein L15 signature. KVILaGeVttp..VtVrglrVTkgAraaIeaaG

Chain	Residue	Details
u	LYS109-GLY139

---

site_id	PS00525
Number of Residues	9
Details	RIBOSOMAL_L6_1 Ribosomal protein L6 signature 1. PEpYKGKGV

Chain	Residue	Details
p	PRO154-VAL162

---

site_id	PS00527
Number of Residues	23
Details	RIBOSOMAL_S14 Ribosomal protein S14 signature. R.CrqtgrphgflrkFGLSRiKVR

Chain	Residue	Details
S	ARG63-ARG85

---

site_id	PS00548
Number of Residues	35
Details	RIBOSOMAL_S3 Ribosomal protein S3 signature. ARtewyreGrVplHt..LradIDyntseahTtyGviG

Chain	Residue	Details
I	ALA163-GLY197

---

site_id	PS00579
Number of Residues	15
Details	RIBOSOMAL_L29 Ribosomal protein L29 signature. QSHLLKqVRRDVARV

Chain	Residue	Details
e	GLN39-VAL53

---

site_id	PS00582
Number of Residues	20
Details	RIBOSOMAL_L33 Ribosomal protein L33 signature. YtTtKNkrtkPekLElkKFD

Chain	Residue	Details
k	TYR21-ASP40

---

site_id	PS00585
Number of Residues	33
Details	RIBOSOMAL_S5 Ribosomal protein S5 signature. GRifsFtAltVVGDgn.GrVGfGygkar.EVpa.AI

Chain	Residue	Details
K	GLY28-ILE60

---

site_id	PS00586
Number of Residues	12
Details	RIBOSOMAL_L16_1 Ribosomal protein L16 signature 1. KRqGKIWIRVFP

Chain	Residue	Details
v	LYS58-PRO69

---

site_id	PS00632
Number of Residues	25
Details	RIBOSOMAL_S4 Ribosomal protein S4 signature. LEgRLdnvVYRmgfGaTraeARqLV

Chain	Residue	Details
J	LEU94-VAL118

---

site_id	PS00634
Number of Residues	33
Details	RIBOSOMAL_L30 Ribosomal protein L30 signature. TLlgLgLrRigHtVeredtpairgMInaVsfMV

Chain	Residue	Details
f	THR23-VAL55

---

site_id	PS00646
Number of Residues	14
Details	RIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGlRHrrGlpVRGQ

Chain	Residue	Details
X	ARG87-GLN100

---

site_id	PS00651
Number of Residues	28
Details	RIBOSOMAL_L9 Ribosomal protein L9 signature. GslGdqvnVkaGYarNFLvpqgkAvpaT

Chain	Residue	Details
r	GLY13-THR40

---

site_id	PS00701
Number of Residues	12
Details	RIBOSOMAL_L16_2 Ribosomal protein L16 signature 2. RMGkGKGnveyW

Chain	Residue	Details
v	ARG81-TRP92

---

site_id	PS00732
Number of Residues	10
Details	RIBOSOMAL_S16 Ribosomal protein S16 signature. VtIRLARHGA

Chain	Residue	Details
U	VAL2-ALA11

---

site_id	PS00783
Number of Residues	23
Details	RIBOSOMAL_L13 Ribosomal protein L13 signature. VKGMLPkgpl.GRamfrkLkVYaG

Chain	Residue	Details
s	VAL105-GLY127

---

site_id	PS00784
Number of Residues	20
Details	RIBOSOMAL_L34 Ribosomal protein L34 signature. KRTFQpsvlkRnrsh.GFraR

Chain	Residue	Details
m	LYS2-ARG21

---

site_id	PS00828
Number of Residues	27
Details	RIBOSOMAL_L36 Ribosomal protein L36 signature. CrnCkiVkRdgvIrViCsaepKHkQrQ

Chain	Residue	Details
q	CYS11-GLN37

---

site_id	PS00831
Number of Residues	15
Details	RIBOSOMAL_L27 Ribosomal protein L27 signature. GsIIvRQRGtkfhaG

Chain	Residue	Details
b	GLY34-GLY48

---

site_id	PS00936
Number of Residues	27
Details	RIBOSOMAL_L35 Ribosomal protein L35 signature. KTVrGAaKRFkktgkggfkhkhanl.RH

Chain	Residue	Details
o	LYS5-HIS31

---

site_id	PS00937
Number of Residues	17
Details	RIBOSOMAL_L20 Ribosomal protein L20 signature. KrqfRqLWIARINaaaR

Chain	Residue	Details
z	LYS54-ARG70

---

site_id	PS00962
Number of Residues	12
Details	RIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. MrDMLKAGVHFG

Chain	Residue	Details
G	MET6-GLY17

---

site_id	PS00963
Number of Residues	25
Details	RIBOSOMAL_S2_2 Ribosomal protein S2 signature 2. PdaLFViDadhEhiaIkEannlGIP

Chain	Residue	Details
G	PRO158-PRO182

---

site_id	PS01015
Number of Residues	16
Details	RIBOSOMAL_L19 Ribosomal protein L19 signature. VkRrGAVR.KAKLYYLR

Chain	Residue	Details
y	VAL86-ARG101

---

site_id	PS01048
Number of Residues	10
Details	RIBOSOMAL_S6 Ribosomal protein S6 signature. GrRQLAYpIN

Chain	Residue	Details
L	GLY43-ASN52

---

site_id	PS01108
Number of Residues	18
Details	RIBOSOMAL_L24 Ribosomal protein L24 signature. DDeViVLtGkdKGkr.GkV

Chain	Residue	Details
3	ASP8-VAL25

---

site_id	PS01143
Number of Residues	22
Details	RIBOSOMAL_L31 Ribosomal protein L31 signature. DVcskcHPFFTgkqrdvatg....GR

Chain	Residue	Details
g	ASP35-ARG56

---

site_id	PS01166
Number of Residues	13
Details	RNA_POL_BETA RNA polymerases beta chain signature. GdKMAGrHGNKGV

Chain	Residue	Details
AA	GLY1063-VAL1075

---

site_id	PS01167
Number of Residues	23
Details	RIBOSOMAL_L17 Ribosomal protein L17 signature. IkTTlpKaKelrrvvEpLITlAK

Chain	Residue	Details
w	ILE34-LYS56

---

site_id	PS01169
Number of Residues	23
Details	RIBOSOMAL_L21 Ribosomal protein L21 signature. VkivKfrrRKhyrkqqGHRQwfT

Chain	Residue	Details
0	VAL72-THR94

---

site_id	PS01181
Number of Residues	13
Details	RIBOSOMAL_S21 Ribosomal protein S21 signature. DvALRRFKRsceK

Chain	Residue	Details
F	ASP13-LYS25

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	3
Details	MOD_RES: N6-succinyllysine => ECO:0000269|PubMed:21151122

Chain	Residue	Details
r	LYS71
AE	CYS895
AE	CYS898
r	LYS83
r	LYS112
AE	CYS88
AE	ASP460
AE	ASP462
AE	ASP464
AE	CYS814
AE	CYS888

---

site_id	SWS_FT_FI2
Number of Residues	1
Details	MOD_RES: N6-acetyllysine => ECO:0000269|PubMed:18723842

Chain	Residue	Details
r	LYS89
H	LYS279

---