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6VUE

wild-type choline TMA lyase in complex with 1-methyl-1,2,3,6-tetrahydropyridin-3-ol

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0005829cellular_componentcytosol
A0016829molecular_functionlyase activity
A0016840molecular_functioncarbon-nitrogen lyase activity
A0033265molecular_functioncholine binding
A0042426biological_processcholine catabolic process
A0042803molecular_functionprotein homodimerization activity
B0003824molecular_functioncatalytic activity
B0005829cellular_componentcytosol
B0016829molecular_functionlyase activity
B0016840molecular_functioncarbon-nitrogen lyase activity
B0033265molecular_functioncholine binding
B0042426biological_processcholine catabolic process
B0042803molecular_functionprotein homodimerization activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue NA A 901
ChainResidue
ASER746
AMET748
AHOH1147
AHOH1173
AHOH1235
BHOH1205

site_idAC2
Number of Residues10
Detailsbinding site for residue RP7 A 902
ChainResidue
AGLY488
ACYS489
AGLU491
ATHR502
ATYR506
ALEU698
AILE700
ATYR208
AASP216
APHE395

site_idAC3
Number of Residues6
Detailsbinding site for residue NA B 901
ChainResidue
AHOH1194
BSER746
BMET748
BHOH1017
BHOH1178
BHOH1200

site_idAC4
Number of Residues8
Detailsbinding site for residue RP7 B 902
ChainResidue
BTYR208
BASP216
BPHE395
BGLY488
BCYS489
BGLU491
BTYR506
BILE700

Functional Information from PROSITE/UniProt
site_idPS00850
Number of Residues9
DetailsGLY_RADICAL_1 Glycine radical domain signature. VvRVAGYSA
ChainResidueDetails
AVAL816-ALA824

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Cysteine radical intermediate => ECO:0000255|HAMAP-Rule:MF_02058, ECO:0000305|PubMed:23151509, ECO:0000305|PubMed:24854437
ChainResidueDetails
ACYS489
BCYS489

site_idSWS_FT_FI2
Number of Residues2
DetailsACT_SITE: Proton acceptor => ECO:0000255|HAMAP-Rule:MF_02058, ECO:0000305|PubMed:24854437
ChainResidueDetails
AGLU491
BGLU491

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: Glycine radical => ECO:0000255|HAMAP-Rule:MF_02058, ECO:0000305|PubMed:23151509, ECO:0000305|PubMed:24854437
ChainResidueDetails
AGLY821
BGLY821

224931

PDB entries from 2024-09-11

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