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6VOD

HIV-1 wild type protease with GRL-052-16A, a tricyclic cyclohexane fused tetrahydrofuranofuran (CHf-THF) derivative as the P2 ligand

Functional Information from GO Data
ChainGOidnamespacecontents
A0004190molecular_functionaspartic-type endopeptidase activity
A0006508biological_processproteolysis
B0004190molecular_functionaspartic-type endopeptidase activity
B0006508biological_processproteolysis
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue NA A 501
ChainResidue
AASP60
AHOH622
AHOH646
AHOH651
AHOH662
AHOH684

site_idAC2
Number of Residues4
Detailsbinding site for residue CL A 502
ChainResidue
BARG41
ATHR74
AASN88
AHOH692

site_idAC3
Number of Residues10
Detailsbinding site for residue GOL A 503
ChainResidue
AGLN18
AMET36
ASER37
AHOH609
AHOH711
BTHR12
BGLU65
BALA67
BGLY68
BHOH380

site_idAC4
Number of Residues30
Detailsbinding site for residue T1R B 201
ChainResidue
ALEU23
AASP25
AGLY27
AALA28
AASP29
AASP30
AILE47
AGLY48
AGLY49
AILE50
APRO81
AVAL82
AILE84
AHOH643
AHOH647
BASP25
BGLY27
BALA28
BASP29
BASP30
BILE47
BGLY48
BGLY49
BILE50
BVAL82
BILE84
BHOH320
BHOH325
BHOH340
BHOH349

site_idAC5
Number of Residues1
Detailsbinding site for residue CL B 202
ChainResidue
BTRP6

site_idAC6
Number of Residues3
Detailsbinding site for residue FMT B 203
ChainResidue
BSER37
BTYR59
BHOH314

Functional Information from PROSITE/UniProt
site_idPS00141
Number of Residues12
DetailsASP_PROTEASE Eukaryotic and viral aspartyl proteases active site. ALLDTGADDTVI
ChainResidueDetails
AALA22-ILE33

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: For protease activity; shared with dimeric partner => ECO:0000255|PROSITE-ProRule:PRU10094
ChainResidueDetails
AASP25
BASP25

site_idSWS_FT_FI2
Number of Residues2
DetailsSITE: Cleavage; by viral protease => ECO:0000250
ChainResidueDetails
APHE99
BPHE99

221051

PDB entries from 2024-06-12

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