Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6VDW

Crystal Structure of Dehaloperoxidase B in Complex with cofactor Manganese(III) Porphyrin and Substrate 4-nitrophenol

Functional Information from GO Data
ChainGOidnamespacecontents
A0004601molecular_functionperoxidase activity
A0005344molecular_functionoxygen carrier activity
A0015671biological_processoxygen transport
A0019825molecular_functionoxygen binding
A0020037molecular_functionheme binding
A0046872molecular_functionmetal ion binding
A0098869biological_processcellular oxidant detoxification
B0004601molecular_functionperoxidase activity
B0005344molecular_functionoxygen carrier activity
B0015671biological_processoxygen transport
B0019825molecular_functionoxygen binding
B0020037molecular_functionheme binding
B0046872molecular_functionmetal ion binding
B0098869biological_processcellular oxidant detoxification
Functional Information from PDB Data
site_idAC1
Number of Residues16
Detailsbinding site for residue MNR A 201
ChainResidue
APHE24
AHIS89
ALEU92
AASN96
APHE97
ALEU127
ANPO202
AHOH314
AGLU31
AASN34
AHIS55
ALYS58
AVAL59
AMET63
AMET86
AGLN88

site_idAC2
Number of Residues8
Detailsbinding site for residue NPO A 202
ChainResidue
APHE21
APHE35
ATYR38
AHIS55
ATHR56
AVAL59
APHE60
AMNR201

site_idAC3
Number of Residues10
Detailsbinding site for residue EDO A 203
ChainResidue
AARG10
AGLY11
AASP12
ALEU13
AARG14
AGLU57
AHOH340
BARG14
BGLU57
BLYS58

site_idAC4
Number of Residues6
Detailsbinding site for residue EDO A 204
ChainResidue
ALYS41
AGLU45
ASER48
AMET49
AHOH369
BSER133

site_idAC5
Number of Residues5
Detailsbinding site for residue EDO A 205
ChainResidue
AASP5
ATHR8
ASER114
AHOH310
BHOH313

site_idAC6
Number of Residues5
Detailsbinding site for residue PEG A 206
ChainResidue
AGLU31
AASN34
AGLY91
ATHR93
AASN96

site_idAC7
Number of Residues6
Detailsbinding site for residue EDO A 207
ChainResidue
AGLU45
AASP68
AARG69
AHOH354
AHOH373
BASP68

site_idAC8
Number of Residues5
Detailsbinding site for residue EDO A 208
ChainResidue
ALYS51
AHIS55
APEG209
AHOH314
BGLN85

site_idAC9
Number of Residues5
Detailsbinding site for residue PEG A 209
ChainResidue
AASN37
ALYS51
AHIS55
AEDO208
AHOH397

site_idAD1
Number of Residues10
Detailsbinding site for residue PEG A 210
ChainResidue
ATHR93
AGLY95
ALYS99
AHOH317
AHOH320
BTHR93
BTHR94
BGLY95
BLYS99
BHOH308

site_idAD2
Number of Residues18
Detailsbinding site for residue MNR B 201
ChainResidue
BPHE24
BGLU31
BASN34
BPHE35
BHIS55
BLYS58
BVAL59
BLEU62
BMET63
BMET86
BGLN88
BHIS89
BLEU92
BASN96
BPHE97
BLEU127
BNPO202
BHOH303

site_idAD3
Number of Residues8
Detailsbinding site for residue NPO B 202
ChainResidue
BVAL59
BPHE60
BMNR201
BPHE21
BPHE35
BTYR38
BHIS55
BTHR56

site_idAD4
Number of Residues6
Detailsbinding site for residue EDO B 203
ChainResidue
AHOH315
BGLN4
BASP5
BTHR8
BSER114
BHOH317

site_idAD5
Number of Residues5
Detailsbinding site for residue EDO B 204
ChainResidue
BASN34
BGLY91
BTHR93
BASN96
BHOH310

site_idAD6
Number of Residues7
Detailsbinding site for residue PEG B 205
ChainResidue
AGLN85
AHOH349
BALA50
BLYS51
BASP54
BHIS55
BHOH303

site_idAD7
Number of Residues11
Detailsbinding site for residue SO4 B 206
ChainResidue
ALYS32
AVAL39
AGLY40
AHOH302
BGLY1
BPHE2
BLYS3
BHOH318
BHOH335
BHOH358
BHOH385

site_idAD8
Number of Residues10
Detailsbinding site for residue SO4 B 207
ChainResidue
AGLY1
APHE2
ALYS3
AASP116
AHOH331
AHOH339
BLYS32
BGLY40
BHOH357
BHOH373

224201

PDB entries from 2024-08-28

PDB statisticsPDBj update infoContact PDBjnumon