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6VD2

Crystal structure of Arabidopsis thaliana S-adenosylmethionine Synthase 2 (AtMAT2) in complex with S-adenosylmethionine

Functional Information from GO Data
ChainGOidnamespacecontents
A0004478molecular_functionmethionine adenosyltransferase activity
A0005507molecular_functioncopper ion binding
A0005515molecular_functionprotein binding
A0005524molecular_functionATP binding
A0005730cellular_componentnucleolus
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006556biological_processS-adenosylmethionine biosynthetic process
A0006730biological_processone-carbon metabolic process
A0009505cellular_componentplant-type cell wall
A0009506cellular_componentplasmodesma
A0016740molecular_functiontransferase activity
A0046872molecular_functionmetal ion binding
A0070062cellular_componentextracellular exosome
B0004478molecular_functionmethionine adenosyltransferase activity
B0005507molecular_functioncopper ion binding
B0005515molecular_functionprotein binding
B0005524molecular_functionATP binding
B0005730cellular_componentnucleolus
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0006556biological_processS-adenosylmethionine biosynthetic process
B0006730biological_processone-carbon metabolic process
B0009505cellular_componentplant-type cell wall
B0009506cellular_componentplasmodesma
B0016740molecular_functiontransferase activity
B0046872molecular_functionmetal ion binding
B0070062cellular_componentextracellular exosome
Functional Information from PDB Data
site_idAC1
Number of Residues23
Detailsbinding site for residue SAM A 401
ChainResidue
AHIS15
AHOH554
AHOH577
AHOH581
AHOH616
AHOH701
BALA41
BGLU56
BGLN99
BASP102
BILE103
APRO16
BGLY121
BASP122
BLYS277
BHOH679
AASP167
ALYS169
ASER235
AARG237
APHE238
AASP246
APO4406

site_idAC2
Number of Residues7
Detailsbinding site for residue MG A 402
ChainResidue
AASP17
AK404
APO4405
APO4406
AHOH536
AHOH613
AHOH675

site_idAC3
Number of Residues7
Detailsbinding site for residue MG A 403
ChainResidue
APO4405
APO4406
AHOH538
BASP279
BHOH538
BHOH558
BHOH598

site_idAC4
Number of Residues7
Detailsbinding site for residue K A 404
ChainResidue
AASP246
AALA247
AMG402
AHOH536
AHOH675
BGLU43
BHOH580

site_idAC5
Number of Residues13
Detailsbinding site for residue PO4 A 405
ChainResidue
AASP17
AARG252
ALYS253
AMG402
AMG403
APO4406
AHOH538
AHOH613
AHOH675
BGLY267
BALA269
BLYS273
BASP279

site_idAC6
Number of Residues13
Detailsbinding site for residue PO4 A 406
ChainResidue
AHIS15
AASP17
ALYS169
ALYS253
ASAM401
AMG402
AMG403
APO4405
AHOH536
AHOH538
AHOH675
BASP122
BHOH538

site_idAC7
Number of Residues7
Detailsbinding site for residue MG A 407
ChainResidue
AASP279
AHOH579
AHOH590
BPO4404
BPO4405
BHOH590
BHOH599

site_idAC8
Number of Residues4
Detailsbinding site for residue PGE A 408
ChainResidue
ATYR368
AARG373
AHOH530
AHOH668

site_idAC9
Number of Residues10
Detailsbinding site for residue MPO A 409
ChainResidue
AASP37
ALYS39
AHIS108
APHE111
ATHR112
ALYS113
AARG114
AILE118
ALYS355
AHOH643

site_idAD1
Number of Residues4
Detailsbinding site for residue PEG A 410
ChainResidue
ALYS338
AGLU339
AARG344
AHOH568

site_idAD2
Number of Residues9
Detailsbinding site for residue PE8 A 411
ChainResidue
BASN178
BMET183
BPHE319
BHOH564
BHOH688
APHE6
AASN178
APHE319
AASP321

site_idAD3
Number of Residues23
Detailsbinding site for residue SAM B 401
ChainResidue
AALA41
AGLU56
AGLN99
AASP102
AILE103
AGLY121
AASP122
ALYS277
AILE310
AHOH546
AHOH659
BHIS15
BPRO16
BASP167
BLYS169
BSER235
BARG237
BPHE238
BASP246
BPO4404
BHOH536
BHOH544
BHOH582

site_idAD4
Number of Residues8
Detailsbinding site for residue MG B 402
ChainResidue
BASP17
BLYS253
BK403
BPO4404
BPO4405
BHOH572
BHOH574
BHOH658

site_idAD5
Number of Residues6
Detailsbinding site for residue K B 403
ChainResidue
AGLU43
BASP246
BALA247
BMG402
BHOH574
BHOH658

site_idAD6
Number of Residues14
Detailsbinding site for residue PO4 B 404
ChainResidue
AASP122
AMG407
AHOH579
BHIS15
BASP17
BLYS169
BLYS253
BSAM401
BMG402
BPO4405
BHOH574
BHOH590
BHOH599
BHOH658

site_idAD7
Number of Residues12
Detailsbinding site for residue PO4 B 405
ChainResidue
AGLY267
AALA269
ALYS273
AASP279
AMG407
BASP17
BARG252
BLYS253
BMG402
BPO4404
BHOH572
BHOH658

site_idAD8
Number of Residues4
Detailsbinding site for residue PO4 B 406
ChainResidue
BILE63
BASP64
BTYR65
BGLU66

site_idAD9
Number of Residues6
Detailsbinding site for residue MPO B 407
ChainResidue
BASP37
BLYS39
BHIS108
BPHE111
BILE118
BLYS355

site_idAE1
Number of Residues4
Detailsbinding site for residue PEG B 408
ChainResidue
BLYS338
BGLU339
BPHE341
BHOH660

Functional Information from PROSITE/UniProt
site_idPS00376
Number of Residues11
DetailsADOMET_SYNTHASE_1 S-adenosylmethionine synthase signature 1. GAGDQGhmfGY
ChainResidueDetails
AGLY119-TYR129

site_idPS00377
Number of Residues9
DetailsADOMET_SYNTHASE_2 S-adenosylmethionine synthase signature 2. GGGAFSgKD
ChainResidueDetails
AGLY266-ASP274

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P13444
ChainResidueDetails
AGLU9
BGLU9

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING: in other chain => ECO:0000250|UniProtKB:Q00266
ChainResidueDetails
AHIS15
AASP167
ASER235
BHIS15
BASP167
BSER235

site_idSWS_FT_FI3
Number of Residues8
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P0A817
ChainResidueDetails
AGLU43
AASP246
AALA269
ALYS273
BGLU43
BASP246
BALA269
BLYS273

site_idSWS_FT_FI4
Number of Residues8
DetailsBINDING: in other chain => ECO:0000250|UniProtKB:P0A817
ChainResidueDetails
AGLU56
AGLN99
AARG252
ALYS277
BGLU56
BGLN99
BARG252
BLYS277

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PDB entries from 2024-07-17

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