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6VD1

Crystal structure of Arabidopsis thaliana S-adenosylmethionine Synthase 2 (AtMAT2) in complex with S-adenosylmethionine and PPNP

Functional Information from GO Data
ChainGOidnamespacecontents
A0004478molecular_functionmethionine adenosyltransferase activity
A0005507molecular_functioncopper ion binding
A0005515molecular_functionprotein binding
A0005524molecular_functionATP binding
A0005730cellular_componentnucleolus
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006556biological_processS-adenosylmethionine biosynthetic process
A0006730biological_processone-carbon metabolic process
A0009505cellular_componentplant-type cell wall
A0009506cellular_componentplasmodesma
A0016740molecular_functiontransferase activity
A0046872molecular_functionmetal ion binding
A0070062cellular_componentextracellular exosome
B0004478molecular_functionmethionine adenosyltransferase activity
B0005507molecular_functioncopper ion binding
B0005515molecular_functionprotein binding
B0005524molecular_functionATP binding
B0005730cellular_componentnucleolus
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0006556biological_processS-adenosylmethionine biosynthetic process
B0006730biological_processone-carbon metabolic process
B0009505cellular_componentplant-type cell wall
B0009506cellular_componentplasmodesma
B0016740molecular_functiontransferase activity
B0046872molecular_functionmetal ion binding
B0070062cellular_componentextracellular exosome
Functional Information from PDB Data
site_idAC1
Number of Residues23
Detailsbinding site for residue PPK A 401
ChainResidue
AHIS15
AHOH517
AHOH556
AHOH568
AHOH583
AHOH653
AHOH655
AHOH661
BASP122
BGLY268
BALA269
AASP17
BLYS273
BASP279
BHOH575
BHOH619
ALYS169
AARG252
ALYS253
AMG402
AMG403
AK405
ASAM409

site_idAC2
Number of Residues5
Detailsbinding site for residue MG A 402
ChainResidue
AASP17
ALYS253
APPK401
AHOH568
AHOH583

site_idAC3
Number of Residues5
Detailsbinding site for residue MG A 403
ChainResidue
APPK401
AHOH655
AHOH661
BHOH575
BHOH619

site_idAC4
Number of Residues5
Detailsbinding site for residue MG A 404
ChainResidue
AHOH585
AHOH588
BPPK401
BHOH638
BHOH653

site_idAC5
Number of Residues5
Detailsbinding site for residue K A 405
ChainResidue
AASP246
AALA247
APPK401
BGLU43
BHOH631

site_idAC6
Number of Residues10
Detailsbinding site for residue MPO A 406
ChainResidue
AASP37
ALYS39
AHIS108
APHE111
ATHR112
ALYS113
ALYS355
AHOH522
AHOH526
AHOH723

site_idAC7
Number of Residues5
Detailsbinding site for residue 1PE A 407
ChainResidue
ALYS338
AGLU339
AHOH508
AHOH542
AHOH561

site_idAC8
Number of Residues5
Detailsbinding site for residue PGE A 408
ChainResidue
ALYS91
AASN180
AHOH552
AHOH776
BVAL94

site_idAC9
Number of Residues24
Detailsbinding site for residue SAM A 409
ChainResidue
AHIS15
APRO16
AASP167
ALYS169
ASER235
AARG237
APHE238
AASP246
APPK401
AHOH556
AHOH615
AHOH673
AHOH679
BALA41
BGLU56
BGLN99
BASP102
BILE103
BGLY121
BASP122
BLYS277
BILE310
BHOH629
BHOH781

site_idAD1
Number of Residues1
Detailsbinding site for residue EDO A 410
ChainResidue
AHOH525

site_idAD2
Number of Residues23
Detailsbinding site for residue PPK B 401
ChainResidue
BARG252
BLYS253
BMG404
BK406
BSAM409
BHOH542
BHOH546
BHOH565
BHOH586
BHOH624
BHOH638
BHOH653
AASP122
AGLY268
AALA269
ALYS273
AASP279
AMG404
AHOH585
AHOH588
BHIS15
BASP17
BLYS169

site_idAD3
Number of Residues8
Detailsbinding site for residue PDO B 402
ChainResidue
BLYS211
BGLU221
BLEU224
BHOH506
BHOH539
BHOH618
BHOH762
BHOH888

site_idAD4
Number of Residues7
Detailsbinding site for residue PGR B 403
ChainResidue
BTHR146
BALA150
BTYR368
BARG373
BHOH505
BHOH885
BHOH991

site_idAD5
Number of Residues5
Detailsbinding site for residue MG B 404
ChainResidue
BASP17
BLYS253
BPPK401
BHOH565
BHOH586

site_idAD6
Number of Residues13
Detailsbinding site for residue PE8 B 405
ChainResidue
AGLY261
AASP321
AHOH848
BPHE4
BASN178
BGLY261
BTRP262
BHOH774
BHOH798
BHOH820
BHOH850
BHOH871
BHOH959

site_idAD7
Number of Residues6
Detailsbinding site for residue K B 406
ChainResidue
AGLU43
AHOH616
BASP246
BALA247
BPPK401
BHOH586

site_idAD8
Number of Residues11
Detailsbinding site for residue MPO B 407
ChainResidue
BASP37
BLYS39
BHIS108
BPHE111
BTHR112
BLYS113
BARG114
BLYS355
BHOH657
BHOH660
BHOH712

site_idAD9
Number of Residues3
Detailsbinding site for residue PGE B 408
ChainResidue
BARG162
BHOH501
BHOH879

site_idAE1
Number of Residues23
Detailsbinding site for residue SAM B 409
ChainResidue
AALA41
AGLU56
AGLN99
AASP102
AILE103
AASP122
ALYS277
AILE310
AHOH590
AHOH782
BHIS15
BPRO16
BASP167
BLYS169
BSER235
BARG237
BPHE238
BASP246
BPPK401
BHOH542
BHOH630
BHOH674
BHOH727

site_idAE2
Number of Residues2
Detailsbinding site for residue EDO B 410
ChainResidue
BMET1
BPRO185

Functional Information from PROSITE/UniProt
site_idPS00376
Number of Residues11
DetailsADOMET_SYNTHASE_1 S-adenosylmethionine synthase signature 1. GAGDQGhmfGY
ChainResidueDetails
AGLY119-TYR129

site_idPS00377
Number of Residues9
DetailsADOMET_SYNTHASE_2 S-adenosylmethionine synthase signature 2. GGGAFSgKD
ChainResidueDetails
AGLY266-ASP274

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P13444
ChainResidueDetails
AGLU9
BGLU9

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING: in other chain => ECO:0000250|UniProtKB:Q00266
ChainResidueDetails
AHIS15
AASP167
ASER235
BHIS15
BASP167
BSER235

site_idSWS_FT_FI3
Number of Residues8
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P0A817
ChainResidueDetails
AGLU43
AASP246
AALA269
ALYS273
BGLU43
BASP246
BALA269
BLYS273

site_idSWS_FT_FI4
Number of Residues8
DetailsBINDING: in other chain => ECO:0000250|UniProtKB:P0A817
ChainResidueDetails
AGLU56
AGLN99
AARG252
ALYS277
BGLU56
BGLN99
BARG252
BLYS277

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PDB entries from 2024-09-18

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