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6VCE

HIV-1 wild type protease with GRL-026-18A, a crown-like tetrahydropyranotetrahydrofuran with a bridged methylene group as a P2 ligand

Functional Information from GO Data
ChainGOidnamespacecontents
A0004190molecular_functionaspartic-type endopeptidase activity
A0006508biological_processproteolysis
B0004190molecular_functionaspartic-type endopeptidase activity
B0006508biological_processproteolysis
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue NA A 501
ChainResidue
AASP60
AHOH619
AHOH633
AHOH648
AHOH658
AHOH682

site_idAC2
Number of Residues3
Detailsbinding site for residue CL A 502
ChainResidue
ATHR74
AASN88
BARG41

site_idAC3
Number of Residues2
Detailsbinding site for residue CL A 503
ChainResidue
ALYS7
AARG8

site_idAC4
Number of Residues3
Detailsbinding site for residue CL A 504
ChainResidue
AILE54
ALYS55
AHOH707

site_idAC5
Number of Residues35
Detailsbinding site for residue G6R B 201
ChainResidue
AARG8
AASP25
AGLY27
AALA28
AASP29
AASP30
AILE47
AGLY48
AGLY49
AILE50
APRO81
AVAL82
AILE84
AHOH656
AHOH685
AHOH703
BARG8
BASP25
BGLY27
BALA28
BASP29
BASP30
BLYS45
BILE47
BGLY48
BGLY49
BILE50
BPRO81
BVAL82
BILE84
BHOH306
BHOH349
BHOH363
BHOH392
BHOH397

site_idAC6
Number of Residues1
Detailsbinding site for residue CL B 202
ChainResidue
BTRP6

site_idAC7
Number of Residues4
Detailsbinding site for residue CL B 203
ChainResidue
BTHR74
BASN88
BHOH330
BHOH400

site_idAC8
Number of Residues3
Detailsbinding site for residue CL B 204
ChainResidue
BTHR12
BGOL205
BHOH311

site_idAC9
Number of Residues10
Detailsbinding site for residue GOL B 205
ChainResidue
AGLN18
AMET36
ASER37
BTHR12
BGLU65
BALA67
BGLY68
BCL204
BHOH365
BHOH418

site_idAD1
Number of Residues5
Detailsbinding site for residue GOL B 206
ChainResidue
ALYS70
AALA71
BGLY40
BHOH305
BHOH407

Functional Information from PROSITE/UniProt
site_idPS00141
Number of Residues12
DetailsASP_PROTEASE Eukaryotic and viral aspartyl proteases active site. ALLDTGADDTVI
ChainResidueDetails
AALA22-ILE33

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: For protease activity; shared with dimeric partner => ECO:0000255|PROSITE-ProRule:PRU10094
ChainResidueDetails
AASP25
BASP25

site_idSWS_FT_FI2
Number of Residues2
DetailsSITE: Cleavage; by viral protease => ECO:0000250
ChainResidueDetails
APHE99
BPHE99

223790

PDB entries from 2024-08-14

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