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6V0A

Crystal structure of cytochrome c nitrite reductase from the bacterium Geobacter lovleyi with bound sulfate

Functional Information from GO Data
ChainGOidnamespacecontents
A0042279molecular_functionnitrite reductase (cytochrome, ammonia-forming) activity
A0042597cellular_componentperiplasmic space
B0042279molecular_functionnitrite reductase (cytochrome, ammonia-forming) activity
B0042597cellular_componentperiplasmic space
C0042279molecular_functionnitrite reductase (cytochrome, ammonia-forming) activity
C0042597cellular_componentperiplasmic space
D0042279molecular_functionnitrite reductase (cytochrome, ammonia-forming) activity
D0042597cellular_componentperiplasmic space
E0042279molecular_functionnitrite reductase (cytochrome, ammonia-forming) activity
E0042597cellular_componentperiplasmic space
F0042279molecular_functionnitrite reductase (cytochrome, ammonia-forming) activity
F0042597cellular_componentperiplasmic space
Functional Information from PDB Data
site_idAC1
Number of Residues21
Detailsbinding site for residue HEC A 501
ChainResidue
ATYR102
ACYS217
AHIS218
ATYR221
AHIS278
AASN407
AHEC503
ASO4506
AHOH625
AHOH627
AHOH630
AASN103
AHOH635
AHOH682
APRO105
AGLN115
AILE118
AARG122
ACYS129
ACYS132
ALYS133

site_idAC2
Number of Residues18
Detailsbinding site for residue HEC A 502
ChainResidue
ATYR49
AGLU52
ATYR53
ATRP56
AALA170
ACYS171
ACYS174
AHIS175
AMET180
ALEU182
AASN206
AARG210
ALYS311
AILE312
ASER313
AHIS315
AHEC503
AHOH673

site_idAC3
Number of Residues21
Detailsbinding site for residue HEC A 503
ChainResidue
APRO105
AARG106
AGLY107
AHIS108
ATYR110
AMET111
AASP114
ACYS132
AVAL213
ACYS214
ACYS217
AHIS218
AHIS301
AILE317
AHEC501
AHEC502
AHEC504
AHOH664
AHOH680
AHOH709
AHOH746

site_idAC4
Number of Residues19
Detailsbinding site for residue HEC A 504
ChainResidue
ASER68
ALYS71
APRO105
AHIS218
ATYR284
AHIS290
ASER296
ACYS297
ACYS300
AHIS301
ASER319
AGLN347
AASN407
APHE411
AHIS412
AHEC503
AHEC505
AHOH647
AHOH663

site_idAC5
Number of Residues15
Detailsbinding site for residue HEC A 505
ChainResidue
AVAL289
AHIS290
AALA293
ACYS300
APRO320
AGLY327
ACYS328
ACYS331
AHIS332
AVAL343
AHEC504
BHIS332
BGLU334
BTRP338
BHEC505

site_idAC6
Number of Residues8
Detailsbinding site for residue SO4 A 506
ChainResidue
AHEC501
AHOH625
AHOH695
APHE98
AARG122
ATYR221
AARG277
AHIS278

site_idAC7
Number of Residues9
Detailsbinding site for residue SO4 B 506
ChainResidue
BPHE98
BARG122
BTYR221
BARG277
BHIS278
BHEC501
BHOH603
BHOH660
BHOH699

site_idAC8
Number of Residues8
Detailsbinding site for residue SO4 C 506
ChainResidue
CPHE98
CARG122
CTYR221
CARG277
CHIS278
CHEC501
CHOH630
CHOH648

site_idAC9
Number of Residues6
Detailsbinding site for residue SO4 D 506
ChainResidue
DPHE98
DARG122
DTYR221
DARG277
DHIS278
DHEC501

site_idAD1
Number of Residues8
Detailsbinding site for residue SO4 E 506
ChainResidue
EPHE98
EARG122
ETYR221
EARG277
EHIS278
EHEC501
EHOH619
EHOH638

site_idAD2
Number of Residues6
Detailsbinding site for residue SO4 F 506
ChainResidue
FPHE98
FARG122
FTYR221
FARG277
FHIS278
FHEC501

site_idAD3
Number of Residues25
Detailsbinding site for Di-peptide HEC B 501 and CYS B 129
ChainResidue
BTYR102
BASN103
BPRO105
BGLN115
BILE118
BARG122
BGLY126
BGLY127
BALA128
BLEU130
BTHR131
BCYS132
BLYS133
BCYS217
BHIS218
BTYR221
BHIS278
BASN407
BHEC503
BSO4506
BHOH602
BHOH628
BHOH652
BHOH660
BHOH703

site_idAD4
Number of Residues22
Detailsbinding site for Di-peptide HEC B 501 and CYS B 132
ChainResidue
BTYR102
BASN103
BPRO105
BGLN115
BILE118
BARG122
BCYS129
BLEU130
BTHR131
BLYS133
BCYS217
BHIS218
BTYR221
BHIS278
BASN407
BHEC503
BSO4506
BHOH602
BHOH628
BHOH652
BHOH660
BHOH703

site_idAD5
Number of Residues19
Detailsbinding site for Di-peptide HEC B 502 and CYS B 171
ChainResidue
BTRP45
BTYR49
BGLU52
BTRP56
BALA170
BILE172
BASP173
BCYS174
BHIS175
BMET180
BLEU182
BASN206
BARG210
BMET302
BLYS311
BILE312
BSER313
BHIS315
BHOH676

site_idAD6
Number of Residues19
Detailsbinding site for Di-peptide HEC B 502 and CYS B 174
ChainResidue
BTYR49
BGLU52
BTRP56
BALA170
BCYS171
BILE172
BASP173
BHIS175
BMET180
BLEU182
BLYS183
BASN206
BARG210
BMET302
BLYS311
BILE312
BSER313
BHIS315
BHOH676

site_idAD7
Number of Residues23
Detailsbinding site for Di-peptide HEC B 503 and CYS B 214
ChainResidue
BPRO105
BARG106
BHIS108
BTYR110
BMET111
BASP114
BCYS132
BLYS133
BSER211
BLEU212
BVAL213
BALA215
BGLN216
BCYS217
BHIS218
BHIS301
BMET302
BILE317
BHEC501
BHEC504
BHOH657
BHOH681
BHOH739

site_idAD8
Number of Residues23
Detailsbinding site for Di-peptide HEC B 503 and CYS B 217
ChainResidue
BPRO105
BARG106
BHIS108
BTYR110
BMET111
BASP114
BCYS132
BLYS133
BVAL213
BCYS214
BALA215
BGLN216
BHIS218
BVAL219
BHIS278
BHIS301
BMET302
BILE317
BHEC501
BHEC504
BHOH657
BHOH681
BHOH739

site_idAD9
Number of Residues22
Detailsbinding site for Di-peptide HEC B 504 and CYS B 297
ChainResidue
BSER68
BLYS71
BPRO105
BARG210
BSER211
BHIS218
BTYR284
BHIS290
BSER296
BALA298
BASP299
BCYS300
BHIS301
BSER319
BGLN347
BASN407
BPHE411
BHIS412
BHEC503
BHEC505
BHOH614
BHOH730

site_idAE1
Number of Residues21
Detailsbinding site for Di-peptide HEC B 504 and CYS B 300
ChainResidue
BSER68
BLYS71
BPRO105
BHIS218
BTYR284
BHIS290
BSER296
BCYS297
BALA298
BASP299
BHIS301
BMET302
BSER319
BGLN347
BASN407
BPHE411
BHIS412
BHEC503
BHEC505
BHOH614
BHOH730

site_idAE2
Number of Residues19
Detailsbinding site for Di-peptide HEC B 505 and CYS B 328
ChainResidue
AHIS332
AGLU334
AHEC505
BHIS290
BALA293
BCYS300
BPHE325
BLYS326
BGLY327
BLYS329
BGLN330
BCYS331
BHIS332
BLEU339
BVAL343
BALA377
BHEC504
BHOH668
BHOH710

site_idAE3
Number of Residues17
Detailsbinding site for Di-peptide HEC B 505 and CYS B 331
ChainResidue
AHIS332
AGLU334
AHEC505
BHIS290
BALA293
BCYS300
BGLY327
BCYS328
BLYS329
BGLN330
BHIS332
BLEU339
BVAL343
BALA377
BHEC504
BHOH668
BHOH710

site_idAE4
Number of Residues24
Detailsbinding site for Di-peptide HEC C 501 and CYS C 129
ChainResidue
CTYR102
CASN103
CGLN115
CILE118
CARG122
CGLY126
CGLY127
CALA128
CLEU130
CTHR131
CCYS132
CLYS133
CCYS217
CHIS218
CTYR221
CHIS278
CASN407
CHEC503
CSO4506
CHOH610
CHOH617
CHOH630
CHOH655
CHOH663

site_idAE5
Number of Residues21
Detailsbinding site for Di-peptide HEC C 501 and CYS C 132
ChainResidue
CTYR102
CASN103
CGLN115
CILE118
CARG122
CCYS129
CLEU130
CTHR131
CLYS133
CCYS217
CHIS218
CTYR221
CHIS278
CASN407
CHEC503
CSO4506
CHOH610
CHOH617
CHOH630
CHOH655
CHOH663

site_idAE6
Number of Residues18
Detailsbinding site for Di-peptide HEC C 502 and CYS C 171
ChainResidue
CTRP45
CTYR49
CGLU52
CTYR53
CTRP56
CALA170
CILE172
CASP173
CCYS174
CHIS175
CLEU182
CASN206
CARG210
CMET302
CLYS311
CILE312
CSER313
CHIS315

site_idAE7
Number of Residues18
Detailsbinding site for Di-peptide HEC C 502 and CYS C 174
ChainResidue
CTYR49
CGLU52
CTYR53
CTRP56
CALA170
CCYS171
CILE172
CASP173
CHIS175
CLEU182
CLYS183
CASN206
CARG210
CMET302
CLYS311
CILE312
CSER313
CHIS315

site_idAE8
Number of Residues23
Detailsbinding site for Di-peptide HEC C 503 and CYS C 214
ChainResidue
CPRO105
CARG106
CGLY107
CHIS108
CTYR110
CMET111
CASP114
CCYS132
CSER211
CLEU212
CVAL213
CALA215
CGLN216
CCYS217
CHIS218
CCYS297
CHIS301
CILE317
CHEC501
CHEC504
CHOH611
CHOH629
CHOH666

site_idAE9
Number of Residues22
Detailsbinding site for Di-peptide HEC C 503 and CYS C 217
ChainResidue
CPRO105
CARG106
CGLY107
CHIS108
CTYR110
CMET111
CASP114
CCYS132
CVAL213
CCYS214
CALA215
CGLN216
CHIS218
CVAL219
CHIS278
CHIS301
CILE317
CHEC501
CHEC504
CHOH611
CHOH629
CHOH666

site_idAF1
Number of Residues25
Detailsbinding site for Di-peptide HEC C 504 and CYS C 297
ChainResidue
CSER68
CLYS71
CPRO105
CARG210
CSER211
CCYS214
CHIS218
CGLU280
CTYR284
CHIS290
CSER296
CALA298
CASP299
CCYS300
CHIS301
CSER319
CPRO320
CGLN347
CASN407
CPHE411
CHIS412
CHEC503
CHEC505
CHOH644
CHOH651

site_idAF2
Number of Residues24
Detailsbinding site for Di-peptide HEC C 504 and CYS C 300
ChainResidue
CSER68
CLYS71
CPRO105
CHIS218
CGLU280
CTYR284
CHIS290
CSER296
CCYS297
CALA298
CASP299
CHIS301
CMET302
CSER319
CPRO320
CGLN347
CASN407
CPHE411
CHIS412
CHEC503
CHEC505
CHOH612
CHOH644
CHOH651

site_idAF3
Number of Residues18
Detailsbinding site for Di-peptide HEC C 505 and CYS C 328
ChainResidue
CVAL289
CHIS290
CALA293
CCYS300
CPRO320
CPHE325
CLYS326
CGLY327
CLYS329
CGLN330
CCYS331
CHIS332
CGLN342
CVAL343
CHEC504
DHIS332
DGLU334
DHEC505

site_idAF4
Number of Residues17
Detailsbinding site for Di-peptide HEC C 505 and CYS C 331
ChainResidue
CVAL289
CHIS290
CALA293
CCYS300
CPRO320
CGLY327
CCYS328
CLYS329
CGLN330
CHIS332
CGLN342
CVAL343
CHEC504
CHOH688
DHIS332
DGLU334
DHEC505

site_idAF5
Number of Residues17
Detailsbinding site for Di-peptide HEC D 501 and CYS D 132
ChainResidue
DTYR102
DASN103
DPRO105
DGLN115
DARG122
DCYS129
DLEU130
DTHR131
DLYS133
DCYS217
DHIS218
DTYR221
DHIS278
DASN407
DHEC503
DSO4506
DHOH645

site_idAF6
Number of Residues20
Detailsbinding site for Di-peptide HEC D 501 and CYS D 129
ChainResidue
DTYR102
DASN103
DPRO105
DGLN115
DARG122
DGLY126
DGLY127
DALA128
DLEU130
DTHR131
DCYS132
DLYS133
DCYS217
DHIS218
DTYR221
DHIS278
DASN407
DHEC503
DSO4506
DHOH645

site_idAF7
Number of Residues20
Detailsbinding site for Di-peptide HEC D 502 and CYS D 174
ChainResidue
DTYR49
DGLU52
DTYR53
DTRP56
DALA170
DCYS171
DILE172
DASP173
DHIS175
DMET180
DLEU182
DLYS183
DASN206
DARG210
DMET302
DLYS311
DILE312
DSER313
DHIS315
DHOH691

site_idAF8
Number of Residues20
Detailsbinding site for Di-peptide HEC D 502 and CYS D 171
ChainResidue
DTRP45
DTYR49
DGLU52
DTYR53
DTRP56
DALA170
DILE172
DASP173
DCYS174
DHIS175
DMET180
DLEU182
DASN206
DARG210
DMET302
DLYS311
DILE312
DSER313
DHIS315
DHOH691

site_idAF9
Number of Residues21
Detailsbinding site for Di-peptide HEC D 503 and CYS D 217
ChainResidue
DPRO105
DARG106
DGLY107
DHIS108
DTYR110
DMET111
DASP114
DCYS132
DVAL213
DCYS214
DALA215
DGLN216
DHIS218
DVAL219
DHIS301
DMET302
DILE317
DMET318
DHEC501
DHEC504
DHOH663

site_idAG1
Number of Residues23
Detailsbinding site for Di-peptide HEC D 503 and CYS D 214
ChainResidue
DPRO105
DARG106
DGLY107
DHIS108
DTYR110
DMET111
DASP114
DCYS132
DSER211
DLEU212
DVAL213
DALA215
DGLN216
DCYS217
DHIS218
DCYS297
DHIS301
DMET302
DILE317
DMET318
DHEC501
DHEC504
DHOH663

site_idAG2
Number of Residues21
Detailsbinding site for Di-peptide HEC D 504 and CYS D 297
ChainResidue
DSER68
DLYS71
DSER211
DCYS214
DHIS218
DGLU280
DTYR284
DHIS290
DVAL295
DSER296
DALA298
DASP299
DCYS300
DHIS301
DSER319
DGLN347
DASN407
DPHE411
DHIS412
DHEC503
DHOH639

site_idAG3
Number of Residues20
Detailsbinding site for Di-peptide HEC D 505 and CYS D 328
ChainResidue
CHIS332
CGLU334
CHEC505
DVAL289
DHIS290
DALA293
DVAL295
DASP299
DCYS300
DPRO320
DPHE325
DLYS326
DGLY327
DLYS329
DGLN330
DCYS331
DHIS332
DGLN342
DVAL343
DILE346

site_idAG4
Number of Residues22
Detailsbinding site for Di-peptide HEC E 501 and CYS E 132
ChainResidue
ETYR102
EASN103
EPRO105
EGLN115
EARG122
ECYS129
ELEU130
ETHR131
ELYS133
ECYS217
EHIS218
ETYR221
EILE223
EPHE236
EHIS278
EASN407
EHEC503
ESO4506
EHOH606
EHOH633
EHOH638
EHOH642

site_idAG5
Number of Residues25
Detailsbinding site for Di-peptide HEC E 501 and CYS E 129
ChainResidue
ETYR102
EASN103
EPRO105
EGLN115
EARG122
EGLY126
EGLY127
EALA128
ELEU130
ETHR131
ECYS132
ELYS133
ECYS217
EHIS218
ETYR221
EILE223
EPHE236
EHIS278
EASN407
EHEC503
ESO4506
EHOH606
EHOH633
EHOH638
EHOH642

site_idAG6
Number of Residues21
Detailsbinding site for Di-peptide HEC E 502 and CYS E 174
ChainResidue
ETYR49
EGLU52
ETYR53
ETRP56
EVAL169
EALA170
ECYS171
EILE172
EASP173
EHIS175
EMET180
EGLY181
ELEU182
ELYS183
EASN206
EARG210
EMET302
ELYS311
EILE312
ESER313
EHIS315

site_idAG7
Number of Residues21
Detailsbinding site for Di-peptide HEC E 502 and CYS E 171
ChainResidue
ETRP45
ETYR49
EGLU52
ETYR53
ETRP56
EVAL169
EALA170
EILE172
EASP173
ECYS174
EHIS175
EMET180
ELEU182
EASN206
EARG210
EMET302
ELYS311
EILE312
ESER313
EHIS315
EHOH657

site_idAG8
Number of Residues21
Detailsbinding site for Di-peptide HEC E 503 and CYS E 217
ChainResidue
EPRO105
EARG106
EGLY107
EHIS108
ETYR110
EMET111
EASP114
ECYS132
ELYS133
EVAL213
ECYS214
EALA215
EGLN216
EHIS218
EVAL219
EHIS301
EMET302
EILE317
EHEC501
EHEC504
EHOH617

site_idAG9
Number of Residues23
Detailsbinding site for Di-peptide HEC E 503 and CYS E 214
ChainResidue
EPRO105
EARG106
EGLY107
EHIS108
ETYR110
EMET111
EASP114
ECYS132
ELYS133
ESER211
ELEU212
EVAL213
EALA215
EGLN216
ECYS217
EHIS218
ECYS297
EHIS301
EMET302
EILE317
EHEC501
EHEC504
EHOH617

site_idAH1
Number of Residues23
Detailsbinding site for Di-peptide HEC E 504 and CYS E 300
ChainResidue
ESER68
ELYS71
EPRO105
EHIS218
EGLU280
ETYR284
EHIS290
EVAL295
ESER296
ECYS297
EALA298
EASP299
EHIS301
EMET302
ESER319
ELEU321
EGLN347
EASN407
EPHE411
EHIS412
EHEC503
EHEC505
EHOH648

site_idAH2
Number of Residues25
Detailsbinding site for Di-peptide HEC E 504 and CYS E 297
ChainResidue
ESER68
ELYS71
EPRO105
EARG210
ESER211
ECYS214
EHIS218
EGLU280
ETYR284
EHIS290
EVAL295
ESER296
EALA298
EASP299
ECYS300
EHIS301
ESER319
ELEU321
EGLN347
EASN407
EPHE411
EHIS412
EHEC503
EHEC505
EHOH648

site_idAH3
Number of Residues19
Detailsbinding site for Di-peptide HEC E 505 and CYS E 331
ChainResidue
EVAL289
EHIS290
EALA293
ECYS300
EPRO320
EGLY327
ECYS328
ELYS329
EGLN330
EHIS332
EVAL343
EILE346
EPRO414
EHEC504
EHOH628
FHIS332
FGLU334
FTRP338
FHEC505

site_idAH4
Number of Residues21
Detailsbinding site for Di-peptide HEC E 505 and CYS E 328
ChainResidue
EVAL289
EHIS290
EALA293
ECYS300
EPRO320
EPHE325
ELYS326
EGLY327
ELYS329
EGLN330
ECYS331
EHIS332
EVAL343
EILE346
EPRO414
EHEC504
EHOH628
FHIS332
FGLU334
FTRP338
FHEC505

site_idAH5
Number of Residues18
Detailsbinding site for Di-peptide HEC F 501 and CYS F 132
ChainResidue
FTYR102
FASN103
FMET111
FGLN115
FARG122
FCYS129
FLEU130
FTHR131
FLYS133
FCYS217
FHIS218
FTYR221
FILE223
FPHE236
FHIS278
FASN407
FHEC503
FSO4506

site_idAH6
Number of Residues20
Detailsbinding site for Di-peptide HEC F 501 and CYS F 129
ChainResidue
FTYR102
FASN103
FGLN115
FARG122
FGLY126
FGLY127
FALA128
FLEU130
FTHR131
FCYS132
FLYS133
FCYS217
FHIS218
FTYR221
FILE223
FPHE236
FHIS278
FASN407
FHEC503
FSO4506

site_idAH7
Number of Residues21
Detailsbinding site for Di-peptide HEC F 502 and CYS F 174
ChainResidue
FHIS315
FHEC503
FTYR49
FGLU52
FTYR53
FTRP56
FALA170
FCYS171
FILE172
FASP173
FHIS175
FMET180
FLEU182
FLYS183
FASN206
FARG210
FVAL213
FMET302
FLYS311
FILE312
FSER313

site_idAH8
Number of Residues21
Detailsbinding site for Di-peptide HEC F 502 and CYS F 171
ChainResidue
FTRP45
FTYR49
FGLU52
FTYR53
FTRP56
FALA170
FILE172
FASP173
FCYS174
FHIS175
FMET180
FLEU182
FASN206
FARG210
FVAL213
FMET302
FLYS311
FILE312
FSER313
FHIS315
FHEC503

site_idAH9
Number of Residues25
Detailsbinding site for Di-peptide HEC F 503 and CYS F 217
ChainResidue
FTHR63
FPRO105
FARG106
FGLY107
FHIS108
FTYR110
FMET111
FASP114
FCYS132
FLYS133
FVAL169
FVAL213
FCYS214
FALA215
FGLN216
FHIS218
FVAL219
FHIS278
FHIS301
FILE317
FHEC501
FHEC502
FHEC504
FHOH614
FHOH629

site_idAI1
Number of Residues26
Detailsbinding site for Di-peptide HEC F 503 and CYS F 214
ChainResidue
FTHR63
FPRO105
FARG106
FGLY107
FHIS108
FTYR110
FMET111
FASP114
FCYS132
FLYS133
FVAL169
FSER211
FLEU212
FVAL213
FALA215
FGLN216
FCYS217
FHIS218
FCYS297
FHIS301
FILE317
FHEC501
FHEC502
FHEC504
FHOH614
FHOH629

site_idAI2
Number of Residues22
Detailsbinding site for Di-peptide HEC F 504 and CYS F 300
ChainResidue
FSER68
FLYS71
FPRO105
FHIS218
FGLU280
FTYR284
FHIS290
FSER296
FCYS297
FALA298
FASP299
FHIS301
FMET302
FSER319
FGLN347
FASN407
FPHE411
FHIS412
FHEC503
FHEC505
FHOH614
FHOH641

site_idAI3
Number of Residues24
Detailsbinding site for Di-peptide HEC F 504 and CYS F 297
ChainResidue
FSER68
FLYS71
FPRO105
FARG210
FSER211
FCYS214
FHIS218
FGLU280
FTYR284
FHIS290
FSER296
FALA298
FASP299
FCYS300
FHIS301
FSER319
FGLN347
FASN407
FPHE411
FHIS412
FHEC503
FHEC505
FHOH614
FHOH641

site_idAI4
Number of Residues21
Detailsbinding site for Di-peptide HEC F 505 and CYS F 331
ChainResidue
DALA376
DALA377
EHIS332
EGLU334
EHEC505
FVAL289
FHIS290
FALA293
FCYS300
FPRO320
FGLY327
FCYS328
FLYS329
FGLN330
FHIS332
FGLN342
FVAL343
FILE346
FPHE411
FHEC504
FHOH636

site_idAI5
Number of Residues23
Detailsbinding site for Di-peptide HEC F 505 and CYS F 328
ChainResidue
DALA376
DALA377
EHIS332
EGLU334
EHEC505
FVAL289
FHIS290
FALA293
FCYS300
FPRO320
FPHE325
FLYS326
FGLY327
FLYS329
FGLN330
FCYS331
FHIS332
FGLN342
FVAL343
FILE346
FPHE411
FHEC504
FHOH636

224931

PDB entries from 2024-09-11

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