6UDE
Crystal structure of Glycerol kinase from Elizabethkingia anophelis NUHP1 in complex with ADP and glycerol
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000166 | molecular_function | nucleotide binding |
| A | 0004370 | molecular_function | glycerol kinase activity |
| A | 0005524 | molecular_function | ATP binding |
| A | 0005829 | cellular_component | cytosol |
| A | 0005975 | biological_process | carbohydrate metabolic process |
| A | 0006071 | biological_process | glycerol metabolic process |
| A | 0006072 | biological_process | glycerol-3-phosphate metabolic process |
| A | 0016301 | molecular_function | kinase activity |
| A | 0016740 | molecular_function | transferase activity |
| A | 0016773 | molecular_function | phosphotransferase activity, alcohol group as acceptor |
| A | 0019563 | biological_process | glycerol catabolic process |
| A | 0046872 | molecular_function | metal ion binding |
| B | 0000166 | molecular_function | nucleotide binding |
| B | 0004370 | molecular_function | glycerol kinase activity |
| B | 0005524 | molecular_function | ATP binding |
| B | 0005829 | cellular_component | cytosol |
| B | 0005975 | biological_process | carbohydrate metabolic process |
| B | 0006071 | biological_process | glycerol metabolic process |
| B | 0006072 | biological_process | glycerol-3-phosphate metabolic process |
| B | 0016301 | molecular_function | kinase activity |
| B | 0016740 | molecular_function | transferase activity |
| B | 0016773 | molecular_function | phosphotransferase activity, alcohol group as acceptor |
| B | 0019563 | biological_process | glycerol catabolic process |
| B | 0046872 | molecular_function | metal ion binding |
| C | 0000166 | molecular_function | nucleotide binding |
| C | 0004370 | molecular_function | glycerol kinase activity |
| C | 0005524 | molecular_function | ATP binding |
| C | 0005829 | cellular_component | cytosol |
| C | 0005975 | biological_process | carbohydrate metabolic process |
| C | 0006071 | biological_process | glycerol metabolic process |
| C | 0006072 | biological_process | glycerol-3-phosphate metabolic process |
| C | 0016301 | molecular_function | kinase activity |
| C | 0016740 | molecular_function | transferase activity |
| C | 0016773 | molecular_function | phosphotransferase activity, alcohol group as acceptor |
| C | 0019563 | biological_process | glycerol catabolic process |
| C | 0046872 | molecular_function | metal ion binding |
| D | 0000166 | molecular_function | nucleotide binding |
| D | 0004370 | molecular_function | glycerol kinase activity |
| D | 0005524 | molecular_function | ATP binding |
| D | 0005829 | cellular_component | cytosol |
| D | 0005975 | biological_process | carbohydrate metabolic process |
| D | 0006071 | biological_process | glycerol metabolic process |
| D | 0006072 | biological_process | glycerol-3-phosphate metabolic process |
| D | 0016301 | molecular_function | kinase activity |
| D | 0016740 | molecular_function | transferase activity |
| D | 0016773 | molecular_function | phosphotransferase activity, alcohol group as acceptor |
| D | 0019563 | biological_process | glycerol catabolic process |
| D | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 21 |
| Details | binding site for residue ADP A 600 |
| Chain | Residue |
| A | ARG18 |
| A | ALA412 |
| A | MG602 |
| A | HOH703 |
| A | HOH711 |
| A | HOH716 |
| A | HOH720 |
| A | HOH737 |
| A | HOH758 |
| A | HOH769 |
| A | HOH808 |
| A | GLY266 |
| A | HOH893 |
| A | HOH901 |
| A | THR267 |
| A | GLY310 |
| A | ALA311 |
| A | ILE313 |
| A | SER326 |
| A | SER327 |
| A | GLY411 |
| site_id | AC2 |
| Number of Residues | 9 |
| Details | binding site for residue GOL A 601 |
| Chain | Residue |
| A | ARG84 |
| A | GLU85 |
| A | TRP104 |
| A | TYR136 |
| A | ASP245 |
| A | GLN246 |
| A | PHE270 |
| A | HOH737 |
| A | HOH893 |
| site_id | AC3 |
| Number of Residues | 8 |
| Details | binding site for residue MG A 602 |
| Chain | Residue |
| A | GLY13 |
| A | THR14 |
| A | THR15 |
| A | SER16 |
| A | ARG18 |
| A | THR267 |
| A | ADP600 |
| A | HOH769 |
| site_id | AC4 |
| Number of Residues | 19 |
| Details | binding site for residue ADP B 600 |
| Chain | Residue |
| B | ARG18 |
| B | GLY266 |
| B | THR267 |
| B | GLY310 |
| B | ALA311 |
| B | ILE313 |
| B | SER327 |
| B | GLY410 |
| B | GLY411 |
| B | ALA412 |
| B | MG602 |
| B | HOH708 |
| B | HOH710 |
| B | HOH712 |
| B | HOH737 |
| B | HOH749 |
| B | HOH759 |
| B | HOH768 |
| B | HOH842 |
| site_id | AC5 |
| Number of Residues | 8 |
| Details | binding site for residue GOL B 601 |
| Chain | Residue |
| B | ARG84 |
| B | GLU85 |
| B | TRP104 |
| B | TYR136 |
| B | ASP245 |
| B | GLN246 |
| B | PHE270 |
| B | HOH708 |
| site_id | AC6 |
| Number of Residues | 8 |
| Details | binding site for residue MG B 602 |
| Chain | Residue |
| B | GLY13 |
| B | THR14 |
| B | THR15 |
| B | SER16 |
| B | ARG18 |
| B | THR267 |
| B | ADP600 |
| B | HOH759 |
| site_id | AC7 |
| Number of Residues | 23 |
| Details | binding site for residue ADP C 600 |
| Chain | Residue |
| C | THR14 |
| C | ARG18 |
| C | GLY266 |
| C | THR267 |
| C | GLY310 |
| C | ALA311 |
| C | ILE313 |
| C | SER327 |
| C | GLY410 |
| C | GLY411 |
| C | ALA412 |
| C | MG602 |
| C | HOH704 |
| C | HOH708 |
| C | HOH722 |
| C | HOH725 |
| C | HOH748 |
| C | HOH757 |
| C | HOH762 |
| C | HOH765 |
| C | HOH796 |
| C | HOH821 |
| C | HOH927 |
| site_id | AC8 |
| Number of Residues | 9 |
| Details | binding site for residue GOL C 601 |
| Chain | Residue |
| C | TYR136 |
| C | ASP245 |
| C | GLN246 |
| C | PHE270 |
| C | HOH725 |
| C | HOH765 |
| C | ARG84 |
| C | GLU85 |
| C | TRP104 |
| site_id | AC9 |
| Number of Residues | 7 |
| Details | binding site for residue MG C 602 |
| Chain | Residue |
| C | GLY13 |
| C | THR14 |
| C | THR15 |
| C | SER16 |
| C | ARG18 |
| C | ADP600 |
| C | HOH762 |
| site_id | AD1 |
| Number of Residues | 19 |
| Details | binding site for residue ADP D 600 |
| Chain | Residue |
| D | ARG18 |
| D | GLY266 |
| D | THR267 |
| D | GLY310 |
| D | ALA311 |
| D | ILE313 |
| D | SER327 |
| D | GLY411 |
| D | ALA412 |
| D | MG602 |
| D | HOH721 |
| D | HOH722 |
| D | HOH753 |
| D | HOH756 |
| D | HOH770 |
| D | HOH784 |
| D | HOH791 |
| D | HOH836 |
| D | HOH864 |
| site_id | AD2 |
| Number of Residues | 9 |
| Details | binding site for residue GOL D 601 |
| Chain | Residue |
| D | ARG84 |
| D | GLU85 |
| D | TRP104 |
| D | TYR136 |
| D | ASP245 |
| D | GLN246 |
| D | PHE270 |
| D | HOH721 |
| D | HOH864 |
| site_id | AD3 |
| Number of Residues | 8 |
| Details | binding site for residue MG D 602 |
| Chain | Residue |
| D | GLY13 |
| D | THR14 |
| D | THR15 |
| D | SER16 |
| D | ARG18 |
| D | THR267 |
| D | ADP600 |
| D | HOH770 |
Functional Information from PROSITE/UniProt
| site_id | PS00445 |
| Number of Residues | 21 |
| Details | FGGY_KINASES_2 FGGY family of carbohydrate kinases signature 2. GtIIGVtrgttdg.HIARATLE |
| Chain | Residue | Details |
| A | GLY362-GLU382 |
| site_id | PS00933 |
| Number of Residues | 13 |
| Details | FGGY_KINASES_1 FGGY family of carbohydrate kinases signature 1. YfSatKLKWILDN |
| Chain | Residue | Details |
| A | TYR136-ASN148 |
