6UDE
Crystal structure of Glycerol kinase from Elizabethkingia anophelis NUHP1 in complex with ADP and glycerol
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004370 | molecular_function | glycerol kinase activity |
A | 0005524 | molecular_function | ATP binding |
A | 0005829 | cellular_component | cytosol |
A | 0005975 | biological_process | carbohydrate metabolic process |
A | 0006071 | biological_process | glycerol metabolic process |
A | 0006072 | biological_process | glycerol-3-phosphate metabolic process |
A | 0016301 | molecular_function | kinase activity |
A | 0016310 | biological_process | phosphorylation |
A | 0016773 | molecular_function | phosphotransferase activity, alcohol group as acceptor |
A | 0019563 | biological_process | glycerol catabolic process |
A | 0046872 | molecular_function | metal ion binding |
B | 0004370 | molecular_function | glycerol kinase activity |
B | 0005524 | molecular_function | ATP binding |
B | 0005829 | cellular_component | cytosol |
B | 0005975 | biological_process | carbohydrate metabolic process |
B | 0006071 | biological_process | glycerol metabolic process |
B | 0006072 | biological_process | glycerol-3-phosphate metabolic process |
B | 0016301 | molecular_function | kinase activity |
B | 0016310 | biological_process | phosphorylation |
B | 0016773 | molecular_function | phosphotransferase activity, alcohol group as acceptor |
B | 0019563 | biological_process | glycerol catabolic process |
B | 0046872 | molecular_function | metal ion binding |
C | 0004370 | molecular_function | glycerol kinase activity |
C | 0005524 | molecular_function | ATP binding |
C | 0005829 | cellular_component | cytosol |
C | 0005975 | biological_process | carbohydrate metabolic process |
C | 0006071 | biological_process | glycerol metabolic process |
C | 0006072 | biological_process | glycerol-3-phosphate metabolic process |
C | 0016301 | molecular_function | kinase activity |
C | 0016310 | biological_process | phosphorylation |
C | 0016773 | molecular_function | phosphotransferase activity, alcohol group as acceptor |
C | 0019563 | biological_process | glycerol catabolic process |
C | 0046872 | molecular_function | metal ion binding |
D | 0004370 | molecular_function | glycerol kinase activity |
D | 0005524 | molecular_function | ATP binding |
D | 0005829 | cellular_component | cytosol |
D | 0005975 | biological_process | carbohydrate metabolic process |
D | 0006071 | biological_process | glycerol metabolic process |
D | 0006072 | biological_process | glycerol-3-phosphate metabolic process |
D | 0016301 | molecular_function | kinase activity |
D | 0016310 | biological_process | phosphorylation |
D | 0016773 | molecular_function | phosphotransferase activity, alcohol group as acceptor |
D | 0019563 | biological_process | glycerol catabolic process |
D | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 21 |
Details | binding site for residue ADP A 600 |
Chain | Residue |
A | ARG18 |
A | ALA412 |
A | MG602 |
A | HOH703 |
A | HOH711 |
A | HOH716 |
A | HOH720 |
A | HOH737 |
A | HOH758 |
A | HOH769 |
A | HOH808 |
A | GLY266 |
A | HOH893 |
A | HOH901 |
A | THR267 |
A | GLY310 |
A | ALA311 |
A | ILE313 |
A | SER326 |
A | SER327 |
A | GLY411 |
site_id | AC2 |
Number of Residues | 9 |
Details | binding site for residue GOL A 601 |
Chain | Residue |
A | ARG84 |
A | GLU85 |
A | TRP104 |
A | TYR136 |
A | ASP245 |
A | GLN246 |
A | PHE270 |
A | HOH737 |
A | HOH893 |
site_id | AC3 |
Number of Residues | 8 |
Details | binding site for residue MG A 602 |
Chain | Residue |
A | GLY13 |
A | THR14 |
A | THR15 |
A | SER16 |
A | ARG18 |
A | THR267 |
A | ADP600 |
A | HOH769 |
site_id | AC4 |
Number of Residues | 19 |
Details | binding site for residue ADP B 600 |
Chain | Residue |
B | ARG18 |
B | GLY266 |
B | THR267 |
B | GLY310 |
B | ALA311 |
B | ILE313 |
B | SER327 |
B | GLY410 |
B | GLY411 |
B | ALA412 |
B | MG602 |
B | HOH708 |
B | HOH710 |
B | HOH712 |
B | HOH737 |
B | HOH749 |
B | HOH759 |
B | HOH768 |
B | HOH842 |
site_id | AC5 |
Number of Residues | 8 |
Details | binding site for residue GOL B 601 |
Chain | Residue |
B | ARG84 |
B | GLU85 |
B | TRP104 |
B | TYR136 |
B | ASP245 |
B | GLN246 |
B | PHE270 |
B | HOH708 |
site_id | AC6 |
Number of Residues | 8 |
Details | binding site for residue MG B 602 |
Chain | Residue |
B | GLY13 |
B | THR14 |
B | THR15 |
B | SER16 |
B | ARG18 |
B | THR267 |
B | ADP600 |
B | HOH759 |
site_id | AC7 |
Number of Residues | 23 |
Details | binding site for residue ADP C 600 |
Chain | Residue |
C | THR14 |
C | ARG18 |
C | GLY266 |
C | THR267 |
C | GLY310 |
C | ALA311 |
C | ILE313 |
C | SER327 |
C | GLY410 |
C | GLY411 |
C | ALA412 |
C | MG602 |
C | HOH704 |
C | HOH708 |
C | HOH722 |
C | HOH725 |
C | HOH748 |
C | HOH757 |
C | HOH762 |
C | HOH765 |
C | HOH796 |
C | HOH821 |
C | HOH927 |
site_id | AC8 |
Number of Residues | 9 |
Details | binding site for residue GOL C 601 |
Chain | Residue |
C | TYR136 |
C | ASP245 |
C | GLN246 |
C | PHE270 |
C | HOH725 |
C | HOH765 |
C | ARG84 |
C | GLU85 |
C | TRP104 |
site_id | AC9 |
Number of Residues | 7 |
Details | binding site for residue MG C 602 |
Chain | Residue |
C | GLY13 |
C | THR14 |
C | THR15 |
C | SER16 |
C | ARG18 |
C | ADP600 |
C | HOH762 |
site_id | AD1 |
Number of Residues | 19 |
Details | binding site for residue ADP D 600 |
Chain | Residue |
D | ARG18 |
D | GLY266 |
D | THR267 |
D | GLY310 |
D | ALA311 |
D | ILE313 |
D | SER327 |
D | GLY411 |
D | ALA412 |
D | MG602 |
D | HOH721 |
D | HOH722 |
D | HOH753 |
D | HOH756 |
D | HOH770 |
D | HOH784 |
D | HOH791 |
D | HOH836 |
D | HOH864 |
site_id | AD2 |
Number of Residues | 9 |
Details | binding site for residue GOL D 601 |
Chain | Residue |
D | ARG84 |
D | GLU85 |
D | TRP104 |
D | TYR136 |
D | ASP245 |
D | GLN246 |
D | PHE270 |
D | HOH721 |
D | HOH864 |
site_id | AD3 |
Number of Residues | 8 |
Details | binding site for residue MG D 602 |
Chain | Residue |
D | GLY13 |
D | THR14 |
D | THR15 |
D | SER16 |
D | ARG18 |
D | THR267 |
D | ADP600 |
D | HOH770 |
Functional Information from PROSITE/UniProt
site_id | PS00445 |
Number of Residues | 21 |
Details | FGGY_KINASES_2 FGGY family of carbohydrate kinases signature 2. GtIIGVtrgttdg.HIARATLE |
Chain | Residue | Details |
A | GLY362-GLU382 |
site_id | PS00933 |
Number of Residues | 13 |
Details | FGGY_KINASES_1 FGGY family of carbohydrate kinases signature 1. YfSatKLKWILDN |
Chain | Residue | Details |
A | TYR136-ASN148 |