Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

6UDE

Crystal structure of Glycerol kinase from Elizabethkingia anophelis NUHP1 in complex with ADP and glycerol

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0004370	molecular_function	glycerol kinase activity
A	0005524	molecular_function	ATP binding
A	0005829	cellular_component	cytosol
A	0005975	biological_process	carbohydrate metabolic process
A	0006071	biological_process	glycerol metabolic process
A	0006072	biological_process	glycerol-3-phosphate metabolic process
A	0016301	molecular_function	kinase activity
A	0016310	biological_process	phosphorylation
A	0016773	molecular_function	phosphotransferase activity, alcohol group as acceptor
A	0019563	biological_process	glycerol catabolic process
A	0046872	molecular_function	metal ion binding
B	0004370	molecular_function	glycerol kinase activity
B	0005524	molecular_function	ATP binding
B	0005829	cellular_component	cytosol
B	0005975	biological_process	carbohydrate metabolic process
B	0006071	biological_process	glycerol metabolic process
B	0006072	biological_process	glycerol-3-phosphate metabolic process
B	0016301	molecular_function	kinase activity
B	0016310	biological_process	phosphorylation
B	0016773	molecular_function	phosphotransferase activity, alcohol group as acceptor
B	0019563	biological_process	glycerol catabolic process
B	0046872	molecular_function	metal ion binding
C	0004370	molecular_function	glycerol kinase activity
C	0005524	molecular_function	ATP binding
C	0005829	cellular_component	cytosol
C	0005975	biological_process	carbohydrate metabolic process
C	0006071	biological_process	glycerol metabolic process
C	0006072	biological_process	glycerol-3-phosphate metabolic process
C	0016301	molecular_function	kinase activity
C	0016310	biological_process	phosphorylation
C	0016773	molecular_function	phosphotransferase activity, alcohol group as acceptor
C	0019563	biological_process	glycerol catabolic process
C	0046872	molecular_function	metal ion binding
D	0004370	molecular_function	glycerol kinase activity
D	0005524	molecular_function	ATP binding
D	0005829	cellular_component	cytosol
D	0005975	biological_process	carbohydrate metabolic process
D	0006071	biological_process	glycerol metabolic process
D	0006072	biological_process	glycerol-3-phosphate metabolic process
D	0016301	molecular_function	kinase activity
D	0016310	biological_process	phosphorylation
D	0016773	molecular_function	phosphotransferase activity, alcohol group as acceptor
D	0019563	biological_process	glycerol catabolic process
D	0046872	molecular_function	metal ion binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	21
Details	binding site for residue ADP A 600

Chain	Residue
A	ARG18
A	ALA412
A	MG602
A	HOH703
A	HOH711
A	HOH716
A	HOH720
A	HOH737
A	HOH758
A	HOH769
A	HOH808
A	GLY266
A	HOH893
A	HOH901
A	THR267
A	GLY310
A	ALA311
A	ILE313
A	SER326
A	SER327
A	GLY411

site_id	AC2
Number of Residues	9
Details	binding site for residue GOL A 601

Chain	Residue
A	ARG84
A	GLU85
A	TRP104
A	TYR136
A	ASP245
A	GLN246
A	PHE270
A	HOH737
A	HOH893

site_id	AC3
Number of Residues	8
Details	binding site for residue MG A 602

Chain	Residue
A	GLY13
A	THR14
A	THR15
A	SER16
A	ARG18
A	THR267
A	ADP600
A	HOH769

site_id	AC4
Number of Residues	19
Details	binding site for residue ADP B 600

Chain	Residue
B	ARG18
B	GLY266
B	THR267
B	GLY310
B	ALA311
B	ILE313
B	SER327
B	GLY410
B	GLY411
B	ALA412
B	MG602
B	HOH708
B	HOH710
B	HOH712
B	HOH737
B	HOH749
B	HOH759
B	HOH768
B	HOH842

site_id	AC5
Number of Residues	8
Details	binding site for residue GOL B 601

Chain	Residue
B	ARG84
B	GLU85
B	TRP104
B	TYR136
B	ASP245
B	GLN246
B	PHE270
B	HOH708

site_id	AC6
Number of Residues	8
Details	binding site for residue MG B 602

Chain	Residue
B	GLY13
B	THR14
B	THR15
B	SER16
B	ARG18
B	THR267
B	ADP600
B	HOH759

site_id	AC7
Number of Residues	23
Details	binding site for residue ADP C 600

Chain	Residue
C	THR14
C	ARG18
C	GLY266
C	THR267
C	GLY310
C	ALA311
C	ILE313
C	SER327
C	GLY410
C	GLY411
C	ALA412
C	MG602
C	HOH704
C	HOH708
C	HOH722
C	HOH725
C	HOH748
C	HOH757
C	HOH762
C	HOH765
C	HOH796
C	HOH821
C	HOH927

site_id	AC8
Number of Residues	9
Details	binding site for residue GOL C 601

Chain	Residue
C	TYR136
C	ASP245
C	GLN246
C	PHE270
C	HOH725
C	HOH765
C	ARG84
C	GLU85
C	TRP104

site_id	AC9
Number of Residues	7
Details	binding site for residue MG C 602

Chain	Residue
C	GLY13
C	THR14
C	THR15
C	SER16
C	ARG18
C	ADP600
C	HOH762

site_id	AD1
Number of Residues	19
Details	binding site for residue ADP D 600

Chain	Residue
D	ARG18
D	GLY266
D	THR267
D	GLY310
D	ALA311
D	ILE313
D	SER327
D	GLY411
D	ALA412
D	MG602
D	HOH721
D	HOH722
D	HOH753
D	HOH756
D	HOH770
D	HOH784
D	HOH791
D	HOH836
D	HOH864

site_id	AD2
Number of Residues	9
Details	binding site for residue GOL D 601

Chain	Residue
D	ARG84
D	GLU85
D	TRP104
D	TYR136
D	ASP245
D	GLN246
D	PHE270
D	HOH721
D	HOH864

site_id	AD3
Number of Residues	8
Details	binding site for residue MG D 602

Chain	Residue
D	GLY13
D	THR14
D	THR15
D	SER16
D	ARG18
D	THR267
D	ADP600
D	HOH770

Functional Information from PROSITE/UniProt

site_id	PS00445
Number of Residues	21
Details	FGGY_KINASES_2 FGGY family of carbohydrate kinases signature 2. GtIIGVtrgttdg.HIARATLE

Chain	Residue	Details
A	GLY362-GLU382

site_id	PS00933
Number of Residues	13
Details	FGGY_KINASES_1 FGGY family of carbohydrate kinases signature 1. YfSatKLKWILDN

Chain	Residue	Details
A	TYR136-ASN148

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)