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6UDB

Spectroscopic and structural characterization of a genetically encoded direct sensor for protein-ligand interactions

Functional Information from GO Data
ChainGOidnamespacecontents
A0009374molecular_functionbiotin binding
B0009374molecular_functionbiotin binding
C0009374molecular_functionbiotin binding
D0009374molecular_functionbiotin binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue PEG A 201
ChainResidue
ATYR43
ATHR90
ATRP108
ADV7110
AASP128
AHOH308

site_idAC2
Number of Residues6
Detailsbinding site for residue PEG B 201
ChainResidue
BTHR90
BTRP108
BASP128
BASN23
BTYR43
BTRP79

site_idAC3
Number of Residues8
Detailsbinding site for residue PEG C 201
ChainResidue
CASN23
CSER27
CTYR43
CTRP79
CTHR90
CTRP108
CASP128
CHOH303

site_idAC4
Number of Residues7
Detailsbinding site for residue PEG D 201
ChainResidue
DASN23
DTYR43
DTRP79
DTHR90
DTRP108
DASP128
DHOH328

site_idAC5
Number of Residues14
Detailsbinding site for Di-peptide LEU B 109 and DV7 B 110
ChainResidue
BALA89
BTHR90
BTHR91
BTRP108
BTHR111
BSER112
BSER122
BTHR123
BLEU124
BHOH316
CTRP120
CVAL125
DSER93
DGLN107

site_idAC6
Number of Residues14
Detailsbinding site for Di-peptide DV7 B 110 and THR B 111
ChainResidue
BSER88
BALA89
BTHR90
BLEU109
BSER112
BSER122
BTHR123
BLEU124
BHOH316
BHOH331
CTRP120
DALA72
DSER93
DGLY94

site_idAC7
Number of Residues19
Detailsbinding site for Di-peptide LEU C 109 and DV7 C 110
ChainResidue
ASER93
AGLN107
BTRP120
BVAL125
CALA89
CTHR90
CTHR91
CTRP108
CTHR111
CSER112
CSER122
CTHR123
CLEU124
CHOH303
CHOH304
CHOH314
CHOH324
CHOH340
CHOH344

site_idAC8
Number of Residues19
Detailsbinding site for Di-peptide DV7 C 110 and THR C 111
ChainResidue
AALA72
ASER93
AGLY94
BTRP120
CSER88
CALA89
CTHR90
CLEU109
CSER112
CSER122
CTHR123
CLEU124
CHOH303
CHOH304
CHOH314
CHOH323
CHOH324
CHOH340
CHOH344

site_idAC9
Number of Residues14
Detailsbinding site for Di-peptide LEU D 109 and DV7 D 110
ChainResidue
DTHR91
DTRP108
DTHR111
DSER112
DSER122
DTHR123
DLEU124
DHOH328
ATRP120
BSER93
BGLN107
BHOH307
DALA89
DTHR90

site_idAD1
Number of Residues15
Detailsbinding site for Di-peptide DV7 D 110 and THR D 111
ChainResidue
ATRP120
BALA72
BSER93
BGLY94
DSER88
DALA89
DTHR90
DTRP108
DLEU109
DSER112
DSER122
DTHR123
DLEU124
DHOH328
DHOH341

Functional Information from PROSITE/UniProt
site_idPS00577
Number of Residues15
DetailsAVIDIN_1 Avidin-like domain signature. NawKStlVGhDtFTK
ChainResidueDetails
AASN118-LYS132

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues20
DetailsBINDING:
ChainResidueDetails
ATYR43
BTRP120
CTYR43
CTYR54
CTRP92
CTRP108
CTRP120
DTYR43
DTYR54
DTRP92
DTRP108
ATYR54
DTRP120
ATRP92
ATRP108
ATRP120
BTYR43
BTYR54
BTRP92
BTRP108

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PDB entries from 2025-06-11

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