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6U1I

Thermus thermophilus D-alanine-D-alanine ligase in complex with ADP, phosphorylated D-cycloserine, Mg2+ and K+

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0008360biological_processregulation of cell shape
A0008716molecular_functionD-alanine-D-alanine ligase activity
A0009252biological_processpeptidoglycan biosynthetic process
A0016874molecular_functionligase activity
A0046872molecular_functionmetal ion binding
A0071555biological_processcell wall organization
B0003824molecular_functioncatalytic activity
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0008360biological_processregulation of cell shape
B0008716molecular_functionD-alanine-D-alanine ligase activity
B0009252biological_processpeptidoglycan biosynthetic process
B0016874molecular_functionligase activity
B0046872molecular_functionmetal ion binding
B0071555biological_processcell wall organization
C0003824molecular_functioncatalytic activity
C0005524molecular_functionATP binding
C0005737cellular_componentcytoplasm
C0005829cellular_componentcytosol
C0008360biological_processregulation of cell shape
C0008716molecular_functionD-alanine-D-alanine ligase activity
C0009252biological_processpeptidoglycan biosynthetic process
C0016874molecular_functionligase activity
C0046872molecular_functionmetal ion binding
C0071555biological_processcell wall organization
D0003824molecular_functioncatalytic activity
D0005524molecular_functionATP binding
D0005737cellular_componentcytoplasm
D0005829cellular_componentcytosol
D0008360biological_processregulation of cell shape
D0008716molecular_functionD-alanine-D-alanine ligase activity
D0009252biological_processpeptidoglycan biosynthetic process
D0016874molecular_functionligase activity
D0046872molecular_functionmetal ion binding
D0071555biological_processcell wall organization
Functional Information from PDB Data
site_idAC1
Number of Residues13
Detailsbinding site for residue ADP A 401
ChainResidue
APHE151
AASN281
AGLU282
AHOH507
AHOH547
ALYS153
AGLY158
AGLU189
ALYS190
AALA191
ALEU192
AGLU197
APHE272

site_idAC2
Number of Residues7
Detailsbinding site for residue MG C 401
ChainResidue
CASP270
CGLU282
CMG402
CADP404
CDS0405
CHOH502
CHOH514

site_idAC3
Number of Residues7
Detailsbinding site for residue MG C 402
ChainResidue
CGLU282
CASN284
CMG401
CK403
CADP404
CDS0405
CHOH540

site_idAC4
Number of Residues7
Detailsbinding site for residue K C 403
ChainResidue
CCYS113
CGLU282
CLEU283
CASN284
CMG402
CHOH540
CHOH570

site_idAC5
Number of Residues24
Detailsbinding site for residue ADP C 404
ChainResidue
CLYS116
CPHE151
CLYS153
CTHR157
CGLY158
CSER159
CSER160
CILE163
CGLU189
CLYS190
CALA191
CLEU192
CGLU197
CTYR218
CPHE222
CTYR223
CLYS228
CPHE272
CASN281
CGLU282
CMG401
CMG402
CDS0405
CHOH514

site_idAC6
Number of Residues16
Detailsbinding site for residue DS0 C 405
ChainResidue
CGLU13
CHIS82
CSER159
CLYS228
CTYR229
CARG268
CGLU282
CASN284
CILE286
CPRO287
CGLY288
CMG401
CMG402
CADP404
CHOH502
CHOH552

Functional Information from PROSITE/UniProt
site_idPS00843
Number of Residues12
DetailsDALA_DALA_LIGASE_1 D-alanine--D-alanine ligase signature 1. HGrfGEDGtVQG
ChainResidueDetails
AHIS82-GLY93

site_idPS00844
Number of Residues28
DetailsDALA_DALA_LIGASE_2 D-alanine--D-alanine ligase signature 2. LgvrGmARVDFFlaegely.....LnELNTiPG
ChainResidueDetails
ALEU261-GLY288

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues16
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00047
ChainResidueDetails
AASP147
CASP270
CGLU282
CASN284
DASP147
DASP270
DGLU282
DASN284
AASP270
AGLU282
AASN284
BASP147
BASP270
BGLU282
BASN284
CASP147

227344

PDB entries from 2024-11-13

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