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6TY6

Variant W229D/F290W-2 of the last common ancestor of Gram-negative bacteria beta-lactamase class A (GNCA4) bound to 5(6)-nitrobenzotriazole (TS-analog)

Functional Information from GO Data
ChainGOidnamespacecontents
A0008800molecular_functionbeta-lactamase activity
A0017001biological_processantibiotic catabolic process
A0030655biological_processbeta-lactam antibiotic catabolic process
A0046677biological_processresponse to antibiotic
B0008800molecular_functionbeta-lactamase activity
B0017001biological_processantibiotic catabolic process
B0030655biological_processbeta-lactam antibiotic catabolic process
B0046677biological_processresponse to antibiotic
C0008800molecular_functionbeta-lactamase activity
C0017001biological_processantibiotic catabolic process
C0030655biological_processbeta-lactam antibiotic catabolic process
C0046677biological_processresponse to antibiotic
Functional Information from PDB Data
site_idAC1
Number of Residues3
Detailsbinding site for residue GOL A 901
ChainResidue
APRO107
ALYS111
ATYR129

site_idAC2
Number of Residues9
Detailsbinding site for residue FMT A 902
ChainResidue
ATHR237
AFMT903
AHOH1122
ASER70
ASER130
AARG220
ALYS234
ATHR235
AGLY236

site_idAC3
Number of Residues8
Detailsbinding site for residue FMT A 903
ChainResidue
ACYS69
ASER70
AASN170
AGLY236
ATHR237
AFMT902
AHOH1020
AHOH1083

site_idAC4
Number of Residues7
Detailsbinding site for residue ACT A 904
ChainResidue
AARG65
AGLY175
AASP176
APRO177
AHOH1064
AHOH1170
CASP101

site_idAC5
Number of Residues6
Detailsbinding site for residue ACT A 905
ChainResidue
AILE155
AGLY156
AASP157
ATHR189
ATHR192
AHOH1002

site_idAC6
Number of Residues6
Detailsbinding site for residue FMT A 906
ChainResidue
AASP63
AVAL159
AHOH1004
AHOH1023
AHOH1035
AHOH1053

site_idAC7
Number of Residues9
Detailsbinding site for residue GOL A 907
ChainResidue
AGLY98
AGLU100
AHOH1081
AHOH1107
BARG43
BGLU64
BARG65
BHOH1549
BHOH1621

site_idAC8
Number of Residues5
Detailsbinding site for residue FMT A 908
ChainResidue
AGLU100
AASP101
AHOH1059
BGLY175
BPRO177

site_idAC9
Number of Residues4
Detailsbinding site for residue ACT A 909
ChainResidue
AARG161
APRO177
AHOH1159
CTRP165

site_idAD1
Number of Residues5
Detailsbinding site for residue NA A 910
ChainResidue
ATYR97
AVAL113
AHOH1081
AHOH1124
BHOH1668

site_idAD2
Number of Residues10
Detailsbinding site for residue 6NT A 911
ChainResidue
AVAL48
AASP229
AVAL250
APRO252
AILE259
ALEU261
AVAL286
ATRP290
AHOH1071
BARG284

site_idAD3
Number of Residues3
Detailsbinding site for residue FMT B 1401
ChainResidue
ATRP165
BARG161
BHOH1511

site_idAD4
Number of Residues8
Detailsbinding site for residue GOL B 1402
ChainResidue
BILE155
BGLY156
BASP157
BALA185
BALA188
BTHR189
BTHR192
BHOH1526

site_idAD5
Number of Residues6
Detailsbinding site for residue FMT B 1403
ChainResidue
BCYS69
BSER70
BASN170
BGLY236
BTHR237
BFMT1404

site_idAD6
Number of Residues8
Detailsbinding site for residue FMT B 1404
ChainResidue
BSER70
BSER130
BARG220
BLYS234
BTHR235
BGLY236
BTHR237
BFMT1403

site_idAD7
Number of Residues4
Detailsbinding site for residue FMT B 1405
ChainResidue
BHIS293
BHOH1592
BARG55
BALA289

site_idAD8
Number of Residues3
Detailsbinding site for residue FMT B 1406
ChainResidue
BASP104
BPRO167
BHOH1612

site_idAD9
Number of Residues5
Detailsbinding site for residue GOL B 1407
ChainResidue
BHIS241
BGLY242
BGLU267
BSER268
BGLN269

site_idAE1
Number of Residues7
Detailsbinding site for residue ACT B 1408
ChainResidue
BTHR96
BHOH1520
BHOH1566
BHOH1604
CASP63
CVAL159
CHOH822

site_idAE2
Number of Residues4
Detailsbinding site for residue FMT B 1409
ChainResidue
AVAL113
AGLY114
BPRO201
BHOH1615

site_idAE3
Number of Residues3
Detailsbinding site for residue FMT B 1410
ChainResidue
BVAL108
BLYS111
BTYR129

site_idAE4
Number of Residues5
Detailsbinding site for residue FMT B 1411
ChainResidue
AGLN32
AHIS292
BALA288
BHIS292
BHOH1626

site_idAE5
Number of Residues4
Detailsbinding site for residue FMT B 1412
ChainResidue
BGLY143
BTRP165
CARG161
CASP163

site_idAE6
Number of Residues10
Detailsbinding site for residue 6NT B 1413
ChainResidue
AARG284
BASP229
BVAL250
BARG256
BILE259
BLEU261
BVAL286
BVAL287
BTRP290
BHOH1565

site_idAE7
Number of Residues4
Detailsbinding site for residue GOL C 701
ChainResidue
BGLU140
BTRP165
CARG161
CPRO177

site_idAE8
Number of Residues7
Detailsbinding site for residue FMT C 702
ChainResidue
CCYS69
CSER70
CASN170
CGLY236
CTHR237
CFMT703
CHOH825

site_idAE9
Number of Residues8
Detailsbinding site for residue FMT C 703
ChainResidue
CSER70
CSER130
CARG220
CLYS234
CTHR235
CGLY236
CTHR237
CFMT702

site_idAF1
Number of Residues7
Detailsbinding site for residue FMT C 704
ChainResidue
AARG65
AHOH1159
CASP101
CLEU137
CGLU140
CHOH850
CHOH852

site_idAF2
Number of Residues3
Detailsbinding site for residue FMT C 705
ChainResidue
CASP228
CALA280
CARG284

site_idAF3
Number of Residues5
Detailsbinding site for residue ACT C 706
ChainResidue
CILE155
CTHR189
CTHR192
CHOH801
CHOH927

site_idAF4
Number of Residues10
Detailsbinding site for residue 6NT C 707
ChainResidue
CVAL48
CASP229
CVAL250
CILE259
CLEU261
CARG284
CVAL286
CVAL287
CTRP290
CHOH831

Functional Information from PROSITE/UniProt
site_idPS00146
Number of Residues16
DetailsBETA_LACTAMASE_A Beta-lactamase class-A active site. FpMCSTfKallAAAVL
ChainResidueDetails
APHE66-LEU81

227111

PDB entries from 2024-11-06

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