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6TPO

Conformation of cd1 nitrite reductase NirS without bound heme d1

Functional Information from GO Data
ChainGOidnamespacecontents
A0009055molecular_functionelectron transfer activity
A0016491molecular_functionoxidoreductase activity
A0020037molecular_functionheme binding
A0042597cellular_componentperiplasmic space
A0046872molecular_functionmetal ion binding
A0050418molecular_functionhydroxylamine reductase activity
A0050421molecular_functionnitrite reductase (NO-forming) activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue 1PE A 901
ChainResidue
AASN308
ATHR316
ALYS354
AASP355
AARG356

site_idAC2
Number of Residues4
Detailsbinding site for residue BU3 A 902
ChainResidue
AHOH1072
AHOH1072
AHOH1082
AHOH1082

site_idAC3
Number of Residues16
Detailsbinding site for residue HEC A 903
ChainResidue
AARG46
ACYS47
ACYS50
AHIS51
AGLY60
ALYS61
ALEU63
AARG71
ATYR75
ATHR84
ALEU86
AGLY87
AMET88
APRO89
ATRP91
AHOH1074

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues85
DetailsDomain: {"description":"Cytochrome c","evidences":[{"source":"PROSITE-ProRule","id":"PRU00433","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues427
DetailsRegion: {"description":"D1-heme domain"}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues2
DetailsBinding site: {"description":"covalent","evidences":[{"source":"PubMed","id":"9331415","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1NIR","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues2
DetailsBinding site: {"description":"axial binding residue","evidences":[{"source":"PubMed","id":"9331415","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1NIR","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues7
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"9331415","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1NIR","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues1
DetailsBinding site: {"description":"proximal binding residue","evidences":[{"source":"PubMed","id":"9331415","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1NIR","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

Catalytic Information from CSA
site_idMCSA1
Number of Residues6
DetailsM-CSA 903
ChainResidueDetails
ACYS47covalently attached
ACYS50covalently attached
AHIS51metal ligand
AMET88metal ligand
AHIS327electrostatic stabiliser
AHIS369electrostatic stabiliser

247536

PDB entries from 2026-01-14

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