6TNH
Deoxyguanylosuccinate synthase (DgsS) quaternary structure with AMPPcP, dGMP, Asp, Magnesium at 2.21 Angstrom resolution
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000166 | molecular_function | nucleotide binding |
| A | 0000287 | molecular_function | magnesium ion binding |
| A | 0004019 | molecular_function | adenylosuccinate synthase activity |
| A | 0005524 | molecular_function | ATP binding |
| A | 0006164 | biological_process | purine nucleotide biosynthetic process |
| A | 0016874 | molecular_function | ligase activity |
| A | 0044208 | biological_process | 'de novo' AMP biosynthetic process |
| A | 0046040 | biological_process | IMP metabolic process |
| A | 0046872 | molecular_function | metal ion binding |
| B | 0000166 | molecular_function | nucleotide binding |
| B | 0000287 | molecular_function | magnesium ion binding |
| B | 0004019 | molecular_function | adenylosuccinate synthase activity |
| B | 0005524 | molecular_function | ATP binding |
| B | 0006164 | biological_process | purine nucleotide biosynthetic process |
| B | 0016874 | molecular_function | ligase activity |
| B | 0044208 | biological_process | 'de novo' AMP biosynthetic process |
| B | 0046040 | biological_process | IMP metabolic process |
| B | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 A 401 |
| Chain | Residue |
| A | ASN28 |
| A | ARG180 |
| A | LYS224 |
| A | LYS325 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 A 402 |
| Chain | Residue |
| A | LYS68 |
| A | ARG69 |
| A | ALA177 |
| A | HOH539 |
| A | HOH541 |
| site_id | AC3 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 A 403 |
| Chain | Residue |
| A | SER79 |
| A | ARG82 |
| A | HOH563 |
| site_id | AC4 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 A 404 |
| Chain | Residue |
| A | ASN81 |
| A | HOH526 |
| A | HOH552 |
| site_id | AC5 |
| Number of Residues | 22 |
| Details | binding site for residue DGP A 405 |
| Chain | Residue |
| A | PHE12 |
| A | SER14 |
| A | ASN40 |
| A | ALA41 |
| A | ILE125 |
| A | GLY126 |
| A | SER127 |
| A | THR128 |
| A | GLN187 |
| A | LEU191 |
| A | CYS201 |
| A | THR202 |
| A | VAL236 |
| A | SER240 |
| A | ACP406 |
| A | HOH509 |
| A | HOH514 |
| A | HOH515 |
| A | HOH531 |
| A | HOH553 |
| A | HOH625 |
| B | ARG142 |
| site_id | AC6 |
| Number of Residues | 21 |
| Details | binding site for residue ACP A 406 |
| Chain | Residue |
| A | GLY13 |
| A | SER14 |
| A | THR15 |
| A | GLY16 |
| A | LYS17 |
| A | GLY18 |
| A | ALA41 |
| A | GLY42 |
| A | HIS43 |
| A | THR44 |
| A | GLN187 |
| A | ASN294 |
| A | PHE295 |
| A | ASN297 |
| A | GLY330 |
| A | PRO331 |
| A | DGP405 |
| A | HOH504 |
| A | HOH523 |
| A | HOH543 |
| A | HOH565 |
| site_id | AC7 |
| Number of Residues | 5 |
| Details | binding site for residue ASP A 407 |
| Chain | Residue |
| A | THR262 |
| A | THR263 |
| A | VAL264 |
| A | ARG269 |
| A | HOH523 |
| site_id | AC8 |
| Number of Residues | 22 |
| Details | binding site for residue DGP B 401 |
| Chain | Residue |
| A | ARG142 |
| B | PHE12 |
| B | GLY13 |
| B | SER14 |
| B | ASN40 |
| B | ALA41 |
| B | GLY126 |
| B | SER127 |
| B | THR128 |
| B | GLN187 |
| B | LEU191 |
| B | CYS201 |
| B | THR202 |
| B | VAL236 |
| B | SER240 |
| B | ACP403 |
| B | HOH501 |
| B | HOH512 |
| B | HOH513 |
| B | HOH514 |
| B | HOH555 |
| B | HOH559 |
| site_id | AC9 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 B 402 |
| Chain | Residue |
| B | ASN28 |
| B | ARG180 |
| B | LYS224 |
| B | LYS325 |
| B | HOH535 |
| site_id | AD1 |
| Number of Residues | 21 |
| Details | binding site for residue ACP B 403 |
| Chain | Residue |
| B | GLN187 |
| B | ASN294 |
| B | PHE295 |
| B | ASN297 |
| B | GLY330 |
| B | PRO331 |
| B | DGP401 |
| B | MG404 |
| B | HOH509 |
| B | HOH530 |
| B | HOH549 |
| B | HOH608 |
| B | GLY13 |
| B | SER14 |
| B | GLY16 |
| B | LYS17 |
| B | GLY18 |
| B | GLY42 |
| B | HIS43 |
| B | THR44 |
| B | ALA186 |
| site_id | AD2 |
| Number of Residues | 5 |
| Details | binding site for residue MG B 404 |
| Chain | Residue |
| B | SER14 |
| B | THR263 |
| B | ARG269 |
| B | ACP403 |
| B | HOH509 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 2 |
| Details | Active site: {"description":"Proton acceptor","evidences":[{"source":"HAMAP-Rule","id":"MF_04166","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"33926954","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 36 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"33926955","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6FM1","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 4 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"33926955","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6TNH","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
