Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

6TJT

Neuropilin2-b1 domain in a complex with the C-terminal VEGFC peptide

Functional Information from GO Data
ChainGOidnamespacecontents
A0001525biological_processangiogenesis
A0005021molecular_functionvascular endothelial growth factor receptor activity
A0007411biological_processaxon guidance
A0017154molecular_functionsemaphorin receptor activity
A0038084biological_processvascular endothelial growth factor signaling pathway
B0001525biological_processangiogenesis
B0005021molecular_functionvascular endothelial growth factor receptor activity
B0007411biological_processaxon guidance
B0017154molecular_functionsemaphorin receptor activity
B0038084biological_processvascular endothelial growth factor signaling pathway
Functional Information from PDB Data
site_idAC1
Number of Residues9
Detailsbinding site for residue SO4 A 501
ChainResidue
AGLY355
ATYR357
AASP389
AALA390
AHOH602
AHOH623
AHOH666
AHOH686
BARG405

site_idAC2
Number of Residues4
Detailsbinding site for residue SO4 A 502
ChainResidue
AHIS381
ALYS382
AVAL383
AHOH704

site_idAC3
Number of Residues5
Detailsbinding site for residue EDO A 503
ChainResidue
AASN278
ALEU395
APHE425
AHOH603
AHOH616

site_idAC4
Number of Residues1
Detailsbinding site for residue SO4 B 501
ChainResidue
BHOH658

site_idAC5
Number of Residues9
Detailsbinding site for residue SO4 B 502
ChainResidue
BHIS377
BGLY378
BLYS379
BASN380
BHIS381
BHOH630
BHOH631
BHOH641
BHOH647

site_idAC6
Number of Residues10
Detailsbinding site for residue SO4 B 503
ChainResidue
AARG405
AHOH622
AHOH712
BGLY355
BTYR357
BASP389
BALA390
BHOH603
BHOH622
BHOH659

site_idAC7
Number of Residues4
Detailsbinding site for residue SO4 B 504
ChainResidue
BHIS381
BLYS382
BVAL383
BHOH708

site_idAC8
Number of Residues6
Detailsbinding site for residue EDO B 505
ChainResidue
AHIS312
ATHR391
AHOH730
BGLN330
BGLY369
BGLU370

site_idAC9
Number of Residues5
Detailsbinding site for residue EDO B 506
ChainResidue
BASN278
BLEU395
BLYS397
BPHE425
BHOH611

Functional Information from PROSITE/UniProt
site_idPS01285
Number of Residues30
DetailsFA58C_1 Coagulation factors 5/8 type C domain (FA58C) signature 1. GWtpnldsnke......YLqVDlrfltmLtaIaTQG
ChainResidueDetails
AGLY317-GLY346

site_idPS01286
Number of Residues17
DetailsFA58C_2 Coagulation factors 5/8 type C domain (FA58C) signature 2. Pqtwhsgia..LRlELfGC
ChainResidueDetails
APRO411-CYS427

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues300
DetailsDomain: {"description":"F5/8 type C 1","evidences":[{"source":"PROSITE-ProRule","id":"PRU00081","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues38
DetailsRegion: {"description":"Disordered","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues24
DetailsCompositional bias: {"description":"Polar residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}
ChainResidueDetails

249697

PDB entries from 2026-02-25

PDB statisticsPDBj update infoContact PDBjnumon