Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

6TDV

Cryo-EM structure of Euglena gracilis mitochondrial ATP synthase, membrane region

Functional Information from GO Data

Chain	GOid	namespace	contents
q	0005739	cellular_component	mitochondrion
Q	0005739	cellular_component	mitochondrion

Functional Information from PDB Data

site_id	AC1
Number of Residues	16
Details	binding site for residue CDL A 501

Chain	Residue
A	GLN86
A	PHE336
A	VAL337
A	CDL502
A	CDL503
A	CDL504
D	CDL202
O	GLN58
A	PRO90
A	TYR100
A	TYR136
A	LEU140
A	LEU332
A	PRO333
A	TRP334
A	ARG335

site_id	AC2
Number of Residues	19
Details	binding site for residue CDL A 502

Chain	Residue
A	GLN52
A	LYS53
A	THR54
A	SER338
A	ALA340
A	TRP341
A	CDL501
A	CDL503
D	TYR41
D	ALA44
D	PHE48
D	LYS52
D	HIS117
D	PHE126
D	CDL201
F	GLY105
K	GLY65
K	LYS67
O	CDL201

site_id	AC3
Number of Residues	15
Details	binding site for residue CDL A 503

Chain	Residue
A	LYS53
A	GLY319
A	ARG320
A	VAL337
A	SER338
A	ASN339
A	CDL501
A	CDL502
A	CDL504
F	ASN48
F	ILE98
F	ILE102
F	VAL103
F	TYR106
J	TRP21

site_id	AC4
Number of Residues	11
Details	binding site for residue CDL A 504

Chain	Residue
A	ARG320
A	LYS324
A	ARG335
A	PHE336
A	CDL501
A	CDL503
J	TYR10
J	ARG12
J	PHE14
J	VAL15
J	TRP21

site_id	AC5
Number of Residues	19
Details	binding site for residue CDL D 201

Chain	Residue
A	CDL502
D	LYS64
D	PRO96
D	GLY98
D	PRO99
D	ILE100
D	ALA101
D	TYR104
E	PHE96
E	CDL101
F	LPP301
K	PRO53
K	TRP56
K	TYR57
K	MET60
K	MET63
K	LYS67
K	VAL70
K	LEU74

site_id	AC6
Number of Residues	14
Details	binding site for residue CDL D 202

Chain	Residue
A	LYS82
A	MET85
A	GLN86
A	VAL96
A	ARG345
A	CDL501
D	PHE113
D	LEU115
D	LYS116
D	ALA119
D	LEU120
D	ALA123
D	VAL127
D	TRP130

site_id	AC7
Number of Residues	7
Details	binding site for residue LMT D 203

Chain	Residue
O	CDL201
O	LPP203
D	GLU13
D	GLN16
F	ASN5
J	TRP35
O	LYS73

site_id	AC8
Number of Residues	11
Details	binding site for residue CDL E 101

Chain	Residue
D	ASN31
D	CDL201
E	ASP71
E	ARG72
E	ARG73
E	ILE82
E	HIS84
E	SER86
E	TRP89
Q	PHE6
Q	PHE7

site_id	AC9
Number of Residues	6
Details	binding site for residue LPP F 301

Chain	Residue
D	CDL201
F	MET145
F	PHE147
F	PHE148
K	ASN52
Q	LEU3

site_id	AD1
Number of Residues	9
Details	binding site for residue LMT F 302

Chain	Residue
F	LYS74
F	TYR83
F	HIS186
F	SER187
F	PHE227
G	ASN25
G	MET28
G	SER29
O	HIS18

site_id	AD2
Number of Residues	3
Details	binding site for residue TRT G 201

Chain	Residue
F	ILE226
G	PHE41
n	LMT201

site_id	AD3
Number of Residues	4
Details	binding site for residue TRT G 202

Chain	Residue
G	ARG44
P	ALA22
P	LYS25
n	LMT201

site_id	AD4
Number of Residues	15
Details	binding site for residue LPP I 101

Chain	Residue
G	ILE15
G	LEU16
I	TYR30
I	PRO34
I	PHE38
I	TRP43
I	SER44
I	ASN47
I	ARG48
I	ARG51
P	GLN87
P	LPP202
S	LEU48
S	LEU52
p	CDL201

site_id	AD5
Number of Residues	2
Details	binding site for residue TRT M 201

Chain	Residue
M	VAL90
N	TRT202

site_id	AD6
Number of Residues	4
Details	binding site for residue TRT M 202

Chain	Residue
M	ALA105
M	TYR106
M	GLU113
m	CDL201

site_id	AD7
Number of Residues	15
Details	binding site for residue CDL M 203

Chain	Residue
M	TRP7
M	PRO14
M	ARG15
M	PRO18
M	LYS19
f	ILE206
m	VAL75
m	TRP78
m	LYS82
m	TRP109
m	TRT204
n	PHE50
n	TRP55
n	HIS62
p	PHE47

site_id	AD8
Number of Residues	7
Details	binding site for residue CDL M 204

Chain	Residue
M	ARG70
M	TYR100
M	TRP104
N	ARG49
N	PHE50
N	PHE54
m	ARG56

site_id	AD9
Number of Residues	7
Details	binding site for residue TRT N 201

Chain	Residue
N	ARG27
N	LEU30
N	LEU35
N	TRP38
N	TRT202
N	LPP203
i	LYS15

site_id	AE1
Number of Residues	3
Details	binding site for residue TRT N 202

Chain	Residue
M	TRT201
N	TRP38
N	TRT201

site_id	AE2
Number of Residues	6
Details	binding site for residue LPP N 203

Chain	Residue
N	ILE32
N	VAL39
N	TRT201
i	LPP101
p	ARG72
p	LYS75

site_id	AE3
Number of Residues	5
Details	binding site for residue LMT N 204

Chain	Residue
N	VAL7
N	VAL8
f	SER31
g	TRT201
g	TRT202

site_id	AE4
Number of Residues	12
Details	binding site for residue CDL O 201

Chain	Residue
A	CDL502
D	PHE126
D	LMT203
E	PHE96
E	PHE97
J	VAL31
O	TRP39
O	LYS43
O	LEU61
O	PHE65
O	ARG68
O	ASN69

site_id	AE5
Number of Residues	6
Details	binding site for residue LPP O 202

Chain	Residue
F	TYR11
O	SER25
O	SER26
O	LEU28
S	THR68
S	VAL70

site_id	AE6
Number of Residues	6
Details	binding site for residue LPP O 203

Chain	Residue
D	LMT203
O	PHE32
O	ARG35
O	ARG38
O	TRP39
S	PHE71

site_id	AE7
Number of Residues	11
Details	binding site for residue CDL P 201

Chain	Residue
F	ILE212
F	ILE220
P	ARG49
P	THR55
P	ILE56
P	VAL57
m	TRP12
m	GLY16
m	ILE17
m	LYS19
m	ALA20

site_id	AE8
Number of Residues	6
Details	binding site for residue LPP P 202

Chain	Residue
I	LPP101
P	ARG72
P	LYS75
n	ILE32
n	VAL39
n	TRT202

site_id	AE9
Number of Residues	2
Details	binding site for residue TRT P 203

Chain	Residue
P	PRO59
P	MET60

site_id	AF1
Number of Residues	9
Details	binding site for residue LMT Q 101

Chain	Residue
Q	PHE16
Q	ARG17
Q	ARG21
Q	PRO57
Q	TRP60
R	ASN65
R	ARG66
R	ASP67
R	ASP68

site_id	AF2
Number of Residues	15
Details	binding site for residue CDL R 101

Chain	Residue
F	PHE156
F	ARG160
F	ASN163
K	LEU21
K	ARG22
K	GLN25
R	LEU31
R	LEU42
R	ALA46
R	ARG47
R	GLY48
R	VAL49
R	ARG50
R	TRP51
R	GLN52

site_id	AF3
Number of Residues	6
Details	binding site for residue LPP R 102

Chain	Residue
K	SER12
K	TRP18
R	ARG50
R	TRP51
R	ILE54
R	ILE58

site_id	AF4
Number of Residues	2
Details	binding site for residue TRT R 103

Chain	Residue
K	THR94
R	ASN62

site_id	AF5
Number of Residues	16
Details	binding site for residue CDL a 501

Chain	Residue
a	GLN86
a	PRO90
a	TYR100
a	TYR136
a	LEU140
a	LEU332
a	PRO333
a	TRP334
a	ARG335
a	PHE336
a	VAL337
a	CDL502
a	CDL503
a	CDL504
d	CDL202
o	GLN58

site_id	AF6
Number of Residues	18
Details	binding site for residue CDL a 502

Chain	Residue
a	GLN52
a	THR54
a	SER338
a	ALA340
a	TRP341
a	CDL501
a	CDL503
d	TYR41
d	ALA44
d	PHE48
d	LYS52
d	HIS117
d	PHE126
d	CDL201
f	GLY105
k	GLY65
k	LYS67
o	CDL201

site_id	AF7
Number of Residues	15
Details	binding site for residue CDL a 503

Chain	Residue
a	LYS53
a	GLY319
a	ARG320
a	VAL337
a	SER338
a	ASN339
a	CDL501
a	CDL502
a	CDL504
f	ASN48
f	ILE98
f	ILE102
f	VAL103
f	TYR106
j	TRP21

site_id	AF8
Number of Residues	11
Details	binding site for residue CDL a 504

Chain	Residue
a	ARG320
a	LYS324
a	ARG335
a	PHE336
a	CDL501
a	CDL503
j	TYR10
j	ARG12
j	PHE14
j	VAL15
j	TRP21

site_id	AF9
Number of Residues	19
Details	binding site for residue CDL d 201

Chain	Residue
a	CDL502
d	LYS64
d	PRO96
d	GLY98
d	PRO99
d	ILE100
d	ALA101
d	TYR104
e	PHE96
e	CDL101
f	LPP301
k	PRO53
k	TRP56
k	TYR57
k	MET60
k	MET63
k	LYS67
k	VAL70
k	LEU74

site_id	AG1
Number of Residues	14
Details	binding site for residue CDL d 202

Chain	Residue
a	LYS82
a	MET85
a	GLN86
a	VAL96
a	ARG345
a	CDL501
d	PHE113
d	LEU115
d	LYS116
d	ALA119
d	LEU120
d	ALA123
d	VAL127
d	TRP130

site_id	AG2
Number of Residues	7
Details	binding site for residue LMT d 203

Chain	Residue
d	GLU13
d	GLN16
f	ASN5
j	TRP35
o	LYS73
o	CDL201
o	LPP203

site_id	AG3
Number of Residues	11
Details	binding site for residue CDL e 101

Chain	Residue
d	ASN31
d	CDL201
e	ASP71
e	ARG72
e	ARG73
e	ILE82
e	HIS84
e	SER86
e	TRP89
q	PHE6
q	PHE7

site_id	AG4
Number of Residues	6
Details	binding site for residue LPP f 301

Chain	Residue
d	CDL201
f	MET145
f	PHE147
f	PHE148
k	ASN52
q	LEU3

site_id	AG5
Number of Residues	10
Details	binding site for residue LMT f 302

Chain	Residue
f	LYS74
f	TYR83
f	HIS186
f	SER187
f	VAL225
f	PHE227
g	ASN25
g	MET28
g	SER29
o	HIS18

site_id	AG6
Number of Residues	2
Details	binding site for residue TRT g 201

Chain	Residue
N	LMT204
g	PHE41

site_id	AG7
Number of Residues	4
Details	binding site for residue TRT g 202

Chain	Residue
N	LMT204
g	ARG44
p	ALA22
p	LYS25

site_id	AG8
Number of Residues	15
Details	binding site for residue LPP i 101

Chain	Residue
N	LPP203
g	ILE15
g	LEU16
i	TYR30
i	PRO34
i	PHE38
i	TRP43
i	SER44
i	ASN47
i	ARG48
i	ARG51
p	GLN87
p	CDL201
s	LEU48
s	LEU52

site_id	AG9
Number of Residues	14
Details	binding site for residue CDL m 201

Chain	Residue
F	ILE206
M	VAL75
M	TRP78
M	LYS82
M	TRP109
M	TRT202
N	PHE50
N	TRP55
N	HIS62
P	PHE47
m	TRP7
m	ARG15
m	PRO18
m	LYS19

site_id	AH1
Number of Residues	9
Details	binding site for residue CDL m 202

Chain	Residue
M	ARG56
m	ARG70
m	TYR100
m	TRP104
m	PHE108
n	ARG49
n	PHE50
n	PHE54
p	CDL201

site_id	AH2
Number of Residues	2
Details	binding site for residue TRT m 203

Chain	Residue
m	VAL90
n	TRT203

site_id	AH3
Number of Residues	4
Details	binding site for residue TRT m 204

Chain	Residue
M	CDL203
m	ALA105
m	TYR106
m	GLU113

site_id	AH4
Number of Residues	5
Details	binding site for residue LMT n 201

Chain	Residue
F	SER31
G	TRT201
G	TRT202
n	VAL7
n	VAL8

site_id	AH5
Number of Residues	7
Details	binding site for residue TRT n 202

Chain	Residue
I	LYS15
P	LPP202
n	ARG27
n	LEU30
n	LEU35
n	TRP38
n	TRT203

site_id	AH6
Number of Residues	3
Details	binding site for residue TRT n 203

Chain	Residue
m	TRT203
n	TRP38
n	TRT202

site_id	AH7
Number of Residues	13
Details	binding site for residue CDL o 201

Chain	Residue
a	CDL502
d	PHE126
d	LMT203
e	PHE96
e	PHE97
j	VAL31
o	TRP36
o	TRP39
o	LYS43
o	LEU61
o	PHE65
o	ARG68
o	ASN69

site_id	AH8
Number of Residues	6
Details	binding site for residue LPP o 202

Chain	Residue
f	TYR11
o	SER25
o	SER26
o	LEU28
s	THR68
s	VAL70

site_id	AH9
Number of Residues	6
Details	binding site for residue LPP o 203

Chain	Residue
d	LMT203
o	PHE32
o	ARG35
o	ARG38
o	TRP39
s	PHE71

site_id	AI1
Number of Residues	15
Details	binding site for residue CDL p 201

Chain	Residue
G	LEU16
I	LPP101
M	LEU120
M	TYR121
P	GLN87
P	TRP90
P	ARG94
g	LEU16
i	LPP101
m	TYR121
m	CDL202
p	PRO83
p	PHE86
p	GLN87
p	TRP90

site_id	AI2
Number of Residues	12
Details	binding site for residue CDL p 202

Chain	Residue
M	TRP12
M	GLY16
M	ILE17
M	LYS19
M	ALA20
f	TYR211
f	ILE212
f	ILE220
p	ARG49
p	THR55
p	ILE56
p	VAL57

site_id	AI3
Number of Residues	2
Details	binding site for residue TRT p 203

Chain	Residue
p	PRO59
p	MET60

site_id	AI4
Number of Residues	9
Details	binding site for residue LMT q 101

Chain	Residue
q	PHE16
q	ARG17
q	ARG21
q	PRO57
q	TRP60
r	ASN65
r	ARG66
r	ASP67
r	ASP68

site_id	AI5
Number of Residues	15
Details	binding site for residue CDL r 101

Chain	Residue
f	PHE156
f	ARG160
f	ASN163
k	LEU21
k	ARG22
k	GLN25
r	LEU31
r	LEU42
r	ALA46
r	ARG47
r	GLY48
r	VAL49
r	ARG50
r	TRP51
r	GLN52

site_id	AI6
Number of Residues	6
Details	binding site for residue LPP r 102

Chain	Residue
k	SER12
k	TRP18
r	ARG50
r	TRP51
r	ILE54
r	ILE58

site_id	AI7
Number of Residues	2
Details	binding site for residue TRT r 103

Chain	Residue
k	THR94
r	ASN62

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)