6SZU
Bat Influenza A polymerase pre-termination complex with pyrophosphate using 44-mer vRNA template with mutated oligo(U) sequence
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003723 | molecular_function | RNA binding |
A | 0039694 | biological_process | viral RNA genome replication |
A | 0046872 | molecular_function | metal ion binding |
A | 0075523 | biological_process | viral translational frameshifting |
B | 0000166 | molecular_function | nucleotide binding |
B | 0001172 | biological_process | RNA-templated transcription |
B | 0003723 | molecular_function | RNA binding |
B | 0003968 | molecular_function | RNA-dependent RNA polymerase activity |
B | 0005737 | cellular_component | cytoplasm |
B | 0019083 | biological_process | viral transcription |
B | 0030430 | cellular_component | host cell cytoplasm |
B | 0034062 | molecular_function | 5'-3' RNA polymerase activity |
B | 0039523 | biological_process | symbiont-mediated suppression of host mRNA transcription via inhibition of RNA polymerase II activity |
B | 0039694 | biological_process | viral RNA genome replication |
B | 0042025 | cellular_component | host cell nucleus |
C | 0003723 | molecular_function | RNA binding |
C | 0006351 | biological_process | DNA-templated transcription |
C | 0006370 | biological_process | 7-methylguanosine mRNA capping |
C | 0019083 | biological_process | viral transcription |
C | 0033650 | cellular_component | host cell mitochondrion |
C | 0039523 | biological_process | symbiont-mediated suppression of host mRNA transcription via inhibition of RNA polymerase II activity |
C | 0042025 | cellular_component | host cell nucleus |
C | 0044423 | cellular_component | virion component |
C | 0075526 | biological_process | cap snatching |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 11 |
Details | binding site for residue M4H A 801 |
Chain | Residue |
A | TYR24 |
A | MG802 |
A | MG803 |
A | ALA37 |
A | ILE38 |
A | HIS41 |
A | GLU80 |
A | ASP108 |
A | GLU119 |
A | ILE120 |
A | LYS134 |
site_id | AC2 |
Number of Residues | 5 |
Details | binding site for residue MG A 802 |
Chain | Residue |
A | GLU80 |
A | LEU106 |
A | PRO107 |
A | ASP108 |
A | M4H801 |
site_id | AC3 |
Number of Residues | 5 |
Details | binding site for residue MG A 803 |
Chain | Residue |
A | HIS41 |
A | ASP108 |
A | GLU119 |
A | ILE120 |
A | M4H801 |
site_id | AC4 |
Number of Residues | 6 |
Details | binding site for residue MG B 801 |
Chain | Residue |
B | ASP305 |
B | ASP445 |
B | ASP446 |
B | HOH1021 |
M | C36 |
M | A37 |
site_id | AC5 |
Number of Residues | 5 |
Details | binding site for residue MG B 802 |
Chain | Residue |
B | ASP305 |
B | ASN306 |
B | ASP445 |
B | POP803 |
M | A37 |
site_id | AC6 |
Number of Residues | 12 |
Details | binding site for residue POP B 803 |
Chain | Residue |
B | ARG239 |
B | ASP305 |
B | ASN306 |
B | LYS308 |
B | TRP309 |
B | ASN310 |
B | ASP445 |
B | LYS481 |
B | MG802 |
B | HOH929 |
B | HOH971 |
M | A37 |
site_id | AC7 |
Number of Residues | 4 |
Details | binding site for residue MG V 101 |
Chain | Residue |
V | U3 |
V | HOH209 |
V | HOH230 |
V | HOH252 |
site_id | AC8 |
Number of Residues | 3 |
Details | binding site for residue MG M 101 |
Chain | Residue |
M | G32 |
M | A33 |
M | HOH202 |