6SZ3
Crystal structure of YTHDC1 with fragment 4 (DHU_DC1_158)
Functional Information from GO Data
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 A 601 |
| Chain | Residue |
| A | GLY344 |
| A | SER346 |
| A | LYS347 |
| A | HOH711 |
| A | HOH719 |
| site_id | AC2 |
| Number of Residues | 7 |
| Details | binding site for residue M1H B 601 |
| Chain | Residue |
| B | VAL429 |
| B | HOH771 |
| B | HOH798 |
| A | TRP465 |
| B | TYR350 |
| B | HIS427 |
| B | TRP428 |
| site_id | AC3 |
| Number of Residues | 8 |
| Details | binding site for residue M1H B 602 |
| Chain | Residue |
| B | ASN367 |
| B | SER378 |
| B | THR379 |
| B | LEU380 |
| B | TRP428 |
| B | MET434 |
| B | HOH724 |
| B | HOH938 |
| site_id | AC4 |
| Number of Residues | 7 |
| Details | binding site for residue SO4 B 603 |
| Chain | Residue |
| B | ARG451 |
| B | GLU452 |
| B | HOH743 |
| B | HOH752 |
| B | HOH760 |
| B | HOH765 |
| B | HOH774 |
| site_id | AC5 |
| Number of Residues | 10 |
| Details | binding site for residue SO4 B 604 |
| Chain | Residue |
| A | LYS386 |
| A | TRP465 |
| A | GLN478 |
| A | GLU479 |
| A | HOH775 |
| B | LYS347 |
| B | HOH755 |
| B | HOH812 |
| B | HOH826 |
| B | HOH879 |
| site_id | AC6 |
| Number of Residues | 6 |
| Details | binding site for residue SO4 B 605 |
| Chain | Residue |
| B | SER419 |
| B | HIS420 |
| B | HIS421 |
| B | ARG451 |
| B | HOH830 |
| B | HOH876 |
| site_id | AC7 |
| Number of Residues | 6 |
| Details | binding site for residue SO4 B 606 |
| Chain | Residue |
| B | ARG404 |
| B | ARG475 |
| B | ASP476 |
| B | HOH701 |
| B | HOH784 |
| B | HOH880 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 6 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"31670957","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6RT4","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6RT5","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6RT6","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6RT7","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 2 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"25242552","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"31670957","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6RT4","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6RT5","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6RT6","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6RT7","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 2 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"25242552","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"18669648","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"20068231","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"23186163","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 137 |
| Details | Domain: {"description":"YTH","evidences":[{"source":"PROSITE-ProRule","id":"PRU00225","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 1 |
| Details | Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"20068231","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
