6SYC
Crystal structure of the lysozyme in presence of bromophenol blue at pH 6.5
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003796 | molecular_function | lysozyme activity |
A | 0005515 | molecular_function | protein binding |
A | 0005576 | cellular_component | extracellular region |
A | 0005615 | cellular_component | extracellular space |
A | 0005737 | cellular_component | cytoplasm |
A | 0005783 | cellular_component | endoplasmic reticulum |
A | 0016231 | molecular_function | beta-N-acetylglucosaminidase activity |
A | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
A | 0016998 | biological_process | cell wall macromolecule catabolic process |
A | 0031640 | biological_process | killing of cells of another organism |
A | 0042742 | biological_process | defense response to bacterium |
A | 0042802 | molecular_function | identical protein binding |
A | 0050829 | biological_process | defense response to Gram-negative bacterium |
A | 0050830 | biological_process | defense response to Gram-positive bacterium |
A | 0051672 | biological_process | obsolete catabolism by organism of cell wall peptidoglycan in other organism |
B | 0003796 | molecular_function | lysozyme activity |
B | 0005515 | molecular_function | protein binding |
B | 0005576 | cellular_component | extracellular region |
B | 0005615 | cellular_component | extracellular space |
B | 0005737 | cellular_component | cytoplasm |
B | 0005783 | cellular_component | endoplasmic reticulum |
B | 0016231 | molecular_function | beta-N-acetylglucosaminidase activity |
B | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
B | 0016998 | biological_process | cell wall macromolecule catabolic process |
B | 0031640 | biological_process | killing of cells of another organism |
B | 0042742 | biological_process | defense response to bacterium |
B | 0042802 | molecular_function | identical protein binding |
B | 0050829 | biological_process | defense response to Gram-negative bacterium |
B | 0050830 | biological_process | defense response to Gram-positive bacterium |
B | 0051672 | biological_process | obsolete catabolism by organism of cell wall peptidoglycan in other organism |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 7 |
Details | binding site for residue NA A 201 |
Chain | Residue |
A | SER60 |
A | CYS64 |
A | ASN65 |
A | ASP66 |
A | THR69 |
A | SER72 |
A | HOH360 |
site_id | AC2 |
Number of Residues | 10 |
Details | binding site for residue LYE A 202 |
Chain | Residue |
A | LYE203 |
B | TYR20 |
B | LYS97 |
B | SER100 |
B | ARG128 |
B | LYE203 |
B | LYE205 |
B | HOH322 |
A | ARG45 |
A | THR47 |
site_id | AC3 |
Number of Residues | 11 |
Details | binding site for residue LYE A 203 |
Chain | Residue |
A | GLY16 |
A | TYR20 |
A | ARG21 |
A | ARG45 |
A | LYS96 |
A | LYE202 |
A | HOH308 |
B | ARG45 |
B | LYE206 |
B | LYE208 |
B | HOH356 |
site_id | AC4 |
Number of Residues | 6 |
Details | binding site for residue IMD A 204 |
Chain | Residue |
A | ASN44 |
A | ASN46 |
A | ASP52 |
A | GLN57 |
B | ARG21 |
B | LYE203 |
site_id | AC5 |
Number of Residues | 6 |
Details | binding site for residue NA B 201 |
Chain | Residue |
B | SER60 |
B | CYS64 |
B | SER72 |
B | ARG73 |
B | HOH335 |
B | HOH346 |
site_id | AC6 |
Number of Residues | 3 |
Details | binding site for residue CL B 202 |
Chain | Residue |
B | HIS15 |
B | ASP87 |
B | ILE88 |
site_id | AC7 |
Number of Residues | 15 |
Details | binding site for residue LYE B 203 |
Chain | Residue |
A | THR47 |
A | ARG128 |
A | LYE202 |
A | IMD204 |
B | GLY16 |
B | TYR20 |
B | ARG21 |
B | ARG45 |
B | ASN46 |
B | ASN93 |
B | LYS96 |
B | LYE204 |
B | LYE208 |
B | HOH304 |
B | HOH360 |
site_id | AC8 |
Number of Residues | 8 |
Details | binding site for residue LYE B 204 |
Chain | Residue |
A | LEU75 |
A | ASN77 |
A | ASN93 |
B | THR89 |
B | ASN93 |
B | LYE203 |
B | LYE208 |
B | HOH313 |
site_id | AC9 |
Number of Residues | 12 |
Details | binding site for residue LYE B 205 |
Chain | Residue |
A | LYE202 |
B | GLY4 |
B | ARG5 |
B | CYS6 |
B | GLU7 |
B | LEU75 |
B | LYS97 |
B | GLY126 |
B | ARG128 |
B | LYE206 |
B | HOH342 |
B | HOH374 |
site_id | AD1 |
Number of Residues | 11 |
Details | binding site for residue LYE B 206 |
Chain | Residue |
A | ARG14 |
A | HIS15 |
A | GLY16 |
A | THR89 |
A | ASN93 |
A | LYS96 |
A | LYE203 |
A | HOH306 |
B | ASN77 |
B | ARG128 |
B | LYE205 |
site_id | AD2 |
Number of Residues | 12 |
Details | binding site for residue LYE B 207 |
Chain | Residue |
B | HOH314 |
B | HOH328 |
A | GLY4 |
A | ARG5 |
A | CYS6 |
A | GLU7 |
A | LEU75 |
A | ASN77 |
A | ARG128 |
A | HOH318 |
B | ARG14 |
B | LYE208 |
site_id | AD3 |
Number of Residues | 12 |
Details | binding site for residue LYE B 208 |
Chain | Residue |
A | LYS97 |
A | SER100 |
A | ARG128 |
A | LYE203 |
B | HIS15 |
B | THR47 |
B | THR89 |
B | ASN93 |
B | LYE203 |
B | LYE204 |
B | LYE207 |
B | HOH348 |
Functional Information from PROSITE/UniProt
site_id | PS00128 |
Number of Residues | 19 |
Details | GLYCOSYL_HYDROL_F22_1 Glycosyl hydrolases family 22 (GH22) domain signature. CnipCsaLlssDItasvnC |
Chain | Residue | Details |
A | CYS76-CYS94 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 4 |
Details | ACT_SITE: |
Chain | Residue | Details |
A | GLU35 | |
A | ASP52 | |
B | GLU35 | |
B | ASP52 |
site_id | SWS_FT_FI2 |
Number of Residues | 2 |
Details | BINDING: |
Chain | Residue | Details |
A | ASP101 | |
B | ASP101 |
Catalytic Information from CSA
site_id | MCSA1 |
Number of Residues | 6 |
Details | M-CSA 203 |
Chain | Residue | Details |
A | GLU35 | hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
A | ASN46 | |
A | ASP48 | |
A | SER50 | |
A | ASP52 | covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, polar/non-polar interaction |
A | ASN59 |
site_id | MCSA2 |
Number of Residues | 6 |
Details | M-CSA 203 |
Chain | Residue | Details |
B | GLU35 | hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
B | ASN46 | |
B | ASP48 | |
B | SER50 | |
B | ASP52 | covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, polar/non-polar interaction |
B | ASN59 |