6SWE

IC2 head of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Functional Information from GO Data

Chain	GOid	namespace	contents
3	0001682	biological_process	tRNA 5'-leader removal
3	0003723	molecular_function	RNA binding
3	0003735	molecular_function	structural constituent of ribosome
3	0004526	molecular_function	ribonuclease P activity
3	0005737	cellular_component	cytoplasm
3	0005840	cellular_component	ribosome
3	0006412	biological_process	translation
3	0042254	biological_process	ribosome biogenesis
3	1990904	cellular_component	ribonucleoprotein complex
6	0003723	molecular_function	RNA binding
6	0003743	molecular_function	translation initiation factor activity
6	0006413	biological_process	translational initiation
H	0003735	molecular_function	structural constituent of ribosome
H	0006412	biological_process	translation
H	0015935	cellular_component	small ribosomal subunit
H	0019843	molecular_function	rRNA binding
K	0000462	biological_process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
K	0003723	molecular_function	RNA binding
K	0003735	molecular_function	structural constituent of ribosome
K	0005840	cellular_component	ribosome
K	0006412	biological_process	translation
K	0015935	cellular_component	small ribosomal subunit
K	0022627	cellular_component	cytosolic small ribosomal subunit
L	0000049	molecular_function	tRNA binding
L	0003723	molecular_function	RNA binding
L	0003735	molecular_function	structural constituent of ribosome
L	0005840	cellular_component	ribosome
L	0006412	biological_process	translation
L	0015935	cellular_component	small ribosomal subunit
O	0003676	molecular_function	nucleic acid binding
O	0003723	molecular_function	RNA binding
O	0003735	molecular_function	structural constituent of ribosome
O	0005829	cellular_component	cytosol
O	0005840	cellular_component	ribosome
O	0006412	biological_process	translation
O	0015935	cellular_component	small ribosomal subunit
O	0019843	molecular_function	rRNA binding
P	0002181	biological_process	cytoplasmic translation
P	0003723	molecular_function	RNA binding
P	0003735	molecular_function	structural constituent of ribosome
P	0005840	cellular_component	ribosome
P	0006412	biological_process	translation
P	0008270	molecular_function	zinc ion binding
P	0015935	cellular_component	small ribosomal subunit
P	0019843	molecular_function	rRNA binding
P	0022627	cellular_component	cytosolic small ribosomal subunit
S	0003735	molecular_function	structural constituent of ribosome
S	0005829	cellular_component	cytosol
S	0005840	cellular_component	ribosome
S	0006412	biological_process	translation
T	0000028	biological_process	ribosomal small subunit assembly
T	0003723	molecular_function	RNA binding
T	0003735	molecular_function	structural constituent of ribosome
T	0005840	cellular_component	ribosome
T	0006412	biological_process	translation
T	0015935	cellular_component	small ribosomal subunit
T	0019843	molecular_function	rRNA binding
T	0022627	cellular_component	cytosolic small ribosomal subunit
U	0000028	biological_process	ribosomal small subunit assembly
U	0003723	molecular_function	RNA binding
U	0003735	molecular_function	structural constituent of ribosome
U	0005840	cellular_component	ribosome
U	0006412	biological_process	translation
U	0022627	cellular_component	cytosolic small ribosomal subunit
X	0000028	biological_process	ribosomal small subunit assembly
X	0003735	molecular_function	structural constituent of ribosome
X	0005840	cellular_component	ribosome
X	0006412	biological_process	translation
X	0022627	cellular_component	cytosolic small ribosomal subunit
X	0030490	biological_process	maturation of SSU-rRNA
Y	0003735	molecular_function	structural constituent of ribosome
Y	0005840	cellular_component	ribosome
Y	0006412	biological_process	translation
Y	0008270	molecular_function	zinc ion binding
Z	0003676	molecular_function	nucleic acid binding
Z	0003723	molecular_function	RNA binding
Z	0003735	molecular_function	structural constituent of ribosome
Z	0006412	biological_process	translation
Z	0015935	cellular_component	small ribosomal subunit
Z	0019843	molecular_function	rRNA binding
Z	0022627	cellular_component	cytosolic small ribosomal subunit

Functional Information from PDB Data

site_id	AC1
Number of Residues	3
Details	binding site for residue MG 2 1402

Chain	Residue
2	C1019
2	G1171
2	G1172

---

site_id	AC2
Number of Residues	4
Details	binding site for residue MG 2 1403

Chain	Residue
2	C951
2	C952
2	U953
2	G1196

---

site_id	AC3
Number of Residues	2
Details	binding site for residue MG 2 1404

Chain	Residue
2	C1019
2	G1171

---

site_id	AC4
Number of Residues	1
Details	binding site for residue MG 2 1405

Chain	Residue
2	U1198

---

site_id	AC5
Number of Residues	2
Details	binding site for residue MG 2 1406

Chain	Residue
2	C1277
2	G1278

---

site_id	AC6
Number of Residues	5
Details	binding site for residue MG 2 1407

Chain	Residue
2	A1293
2	C1294
2	U1295
2	C1296
2	G1297

---

site_id	AC7
Number of Residues	4
Details	binding site for residue ZN P 101

Chain	Residue
P	CYS21
P	CYS24
P	CYS39
P	CYS42

---

site_id	AC8
Number of Residues	1
Details	binding site for residue MG 4 101

Chain	Residue
4	A38

---

site_id	AC9
Number of Residues	3
Details	binding site for residues B8H 2 938 and 5MC 2 939

Chain	Residue
2	U937
2	A940
4	C35

---

Functional Information from PROSITE/UniProt

site_id	PS00323
Number of Residues	25
Details	RIBOSOMAL_S19 Ribosomal protein S19 signature. NGKefvpveIkpemIGhyLGEFapT

Chain	Residue	Details
T	ASN85-THR109

---

site_id	PS00360
Number of Residues	19
Details	RIBOSOMAL_S9 Ribosomal protein S9 signature. GGGfmGQaeAariAiARAL

Chain	Residue	Details
K	GLY68-LEU86

---

site_id	PS00361
Number of Residues	16
Details	RIBOSOMAL_S10 Ribosomal protein S10 signature. AertGVrmsGPIpLPT

Chain	Residue	Details
L	ALA27-THR42

---

site_id	PS00527
Number of Residues	22
Details	RIBOSOMAL_S14 Ribosomal protein S14 signature. R.Cgqygpiirihg.LMLCRhCFR

Chain	Residue	Details
P	ARG23-ARG44

---

site_id	PS00628
Number of Residues	20
Details	RIBOSOMAL_S19E Ribosomal protein S19e signature. PerfykaGgsIiRkALQqLE

Chain	Residue	Details
U	PRO87-GLU106

---

site_id	PS00646
Number of Residues	14
Details	RIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGiRHelGlpVRGQ

Chain	Residue	Details
O	ARG116-GLN129

---

site_id	PS00712
Number of Residues	16
Details	RIBOSOMAL_S17E Ribosomal protein S17e signature. VtSKkIRNrIAGYiTK

Chain	Residue	Details
S	VAL41-LYS56

---

site_id	PS00961
Number of Residues	9
Details	RIBOSOMAL_S28E Ribosomal protein S28e signature. ETEREAReI

Chain	Residue	Details
X	GLU59-ILE67

---

site_id	PS01082
Number of Residues	18
Details	RIBOSOMAL_L7AE Ribosomal protein L7Ae signature. CeekeIPYiyVpSKkeLG

Chain	Residue	Details
3	CYS70-GLY87

---

site_id	PS01262
Number of Residues	23
Details	IF1A Eukaryotic initiation factor 1A signature. AlGaGWmdvrCeDGkiRrcRIpG

Chain	Residue	Details
6	ALA31-GLY53

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	27
Details	Region: {"description":"Disordered","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	10
Details	Compositional bias: {"description":"Basic and acidic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	16
Details	Compositional bias: {"description":"Basic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	4
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01364","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI5
Number of Residues	21
Details	Zinc finger: {"description":"C4-type","evidences":[{"source":"HAMAP-Rule","id":"MF_00777","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI6
Number of Residues	4
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00777","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI7
Number of Residues	69
Details	Domain: {"description":"KH type-2","evidences":[{"source":"HAMAP-Rule","id":"MF_01309","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---