6SWC
IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| 0 | 0005840 | cellular_component | ribosome |
| 0 | 1990904 | cellular_component | ribonucleoprotein complex |
| 3 | 0001682 | biological_process | tRNA 5'-leader removal |
| 3 | 0003723 | molecular_function | RNA binding |
| 3 | 0003735 | molecular_function | structural constituent of ribosome |
| 3 | 0004526 | molecular_function | ribonuclease P activity |
| 3 | 0005737 | cellular_component | cytoplasm |
| 3 | 0005840 | cellular_component | ribosome |
| 3 | 0006412 | biological_process | translation |
| 3 | 0008033 | biological_process | tRNA processing |
| 3 | 0019843 | molecular_function | rRNA binding |
| 3 | 0042254 | biological_process | ribosome biogenesis |
| 3 | 1990904 | cellular_component | ribonucleoprotein complex |
| 6 | 0003723 | molecular_function | RNA binding |
| 6 | 0003743 | molecular_function | translation initiation factor activity |
| 6 | 0006412 | biological_process | translation |
| 6 | 0006413 | biological_process | translational initiation |
| 7 | 0000049 | molecular_function | tRNA binding |
| 7 | 0000166 | molecular_function | nucleotide binding |
| 7 | 0001731 | biological_process | formation of translation preinitiation complex |
| 7 | 0003743 | molecular_function | translation initiation factor activity |
| 7 | 0003746 | molecular_function | translation elongation factor activity |
| 7 | 0003924 | molecular_function | GTPase activity |
| 7 | 0005515 | molecular_function | protein binding |
| 7 | 0005525 | molecular_function | GTP binding |
| 7 | 0006412 | biological_process | translation |
| 7 | 0006413 | biological_process | translational initiation |
| 7 | 0006414 | biological_process | translational elongation |
| 7 | 0016787 | molecular_function | hydrolase activity |
| 7 | 0046872 | molecular_function | metal ion binding |
| 8 | 0003743 | molecular_function | translation initiation factor activity |
| 8 | 0006412 | biological_process | translation |
| 8 | 0006413 | biological_process | translational initiation |
| 9 | 0003676 | molecular_function | nucleic acid binding |
| 9 | 0003723 | molecular_function | RNA binding |
| 9 | 0003743 | molecular_function | translation initiation factor activity |
| 9 | 0005515 | molecular_function | protein binding |
| 9 | 0006412 | biological_process | translation |
| 9 | 0006413 | biological_process | translational initiation |
| 9 | 0043022 | molecular_function | ribosome binding |
| A | 0003735 | molecular_function | structural constituent of ribosome |
| A | 0005840 | cellular_component | ribosome |
| A | 0006412 | biological_process | translation |
| A | 1990904 | cellular_component | ribonucleoprotein complex |
| B | 0003735 | molecular_function | structural constituent of ribosome |
| B | 0005840 | cellular_component | ribosome |
| B | 0006412 | biological_process | translation |
| B | 0015935 | cellular_component | small ribosomal subunit |
| B | 1990904 | cellular_component | ribonucleoprotein complex |
| D | 0003723 | molecular_function | RNA binding |
| D | 0003735 | molecular_function | structural constituent of ribosome |
| D | 0005840 | cellular_component | ribosome |
| D | 0006412 | biological_process | translation |
| D | 0015935 | cellular_component | small ribosomal subunit |
| D | 0019843 | molecular_function | rRNA binding |
| D | 0042274 | biological_process | ribosomal small subunit biogenesis |
| D | 0043226 | cellular_component | organelle |
| D | 1990904 | cellular_component | ribonucleoprotein complex |
| E | 0003723 | molecular_function | RNA binding |
| E | 0003735 | molecular_function | structural constituent of ribosome |
| E | 0005840 | cellular_component | ribosome |
| E | 0006412 | biological_process | translation |
| E | 0019843 | molecular_function | rRNA binding |
| E | 0022627 | cellular_component | cytosolic small ribosomal subunit |
| E | 1990904 | cellular_component | ribonucleoprotein complex |
| F | 0003723 | molecular_function | RNA binding |
| F | 0003735 | molecular_function | structural constituent of ribosome |
| F | 0005840 | cellular_component | ribosome |
| F | 0006412 | biological_process | translation |
| F | 0015935 | cellular_component | small ribosomal subunit |
| F | 0019843 | molecular_function | rRNA binding |
| F | 0022627 | cellular_component | cytosolic small ribosomal subunit |
| F | 1990904 | cellular_component | ribonucleoprotein complex |
| G | 0003735 | molecular_function | structural constituent of ribosome |
| G | 0005840 | cellular_component | ribosome |
| G | 0006412 | biological_process | translation |
| G | 1990904 | cellular_component | ribonucleoprotein complex |
| H | 0003723 | molecular_function | RNA binding |
| H | 0003735 | molecular_function | structural constituent of ribosome |
| H | 0005840 | cellular_component | ribosome |
| H | 0006412 | biological_process | translation |
| H | 0015935 | cellular_component | small ribosomal subunit |
| H | 0019843 | molecular_function | rRNA binding |
| H | 1990904 | cellular_component | ribonucleoprotein complex |
| I | 0003723 | molecular_function | RNA binding |
| I | 0003735 | molecular_function | structural constituent of ribosome |
| I | 0005840 | cellular_component | ribosome |
| I | 0006412 | biological_process | translation |
| I | 0019843 | molecular_function | rRNA binding |
| I | 1990904 | cellular_component | ribonucleoprotein complex |
| J | 0003735 | molecular_function | structural constituent of ribosome |
| J | 0005840 | cellular_component | ribosome |
| J | 0006412 | biological_process | translation |
| J | 1990904 | cellular_component | ribonucleoprotein complex |
| K | 0000462 | biological_process | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
| K | 0003723 | molecular_function | RNA binding |
| K | 0003735 | molecular_function | structural constituent of ribosome |
| K | 0005840 | cellular_component | ribosome |
| K | 0006412 | biological_process | translation |
| K | 0015935 | cellular_component | small ribosomal subunit |
| K | 0022627 | cellular_component | cytosolic small ribosomal subunit |
| K | 1990904 | cellular_component | ribonucleoprotein complex |
| L | 0000049 | molecular_function | tRNA binding |
| L | 0003723 | molecular_function | RNA binding |
| L | 0003735 | molecular_function | structural constituent of ribosome |
| L | 0005840 | cellular_component | ribosome |
| L | 0006412 | biological_process | translation |
| L | 0015935 | cellular_component | small ribosomal subunit |
| L | 1990904 | cellular_component | ribonucleoprotein complex |
| M | 0003723 | molecular_function | RNA binding |
| M | 0003735 | molecular_function | structural constituent of ribosome |
| M | 0005840 | cellular_component | ribosome |
| M | 0006412 | biological_process | translation |
| M | 0019843 | molecular_function | rRNA binding |
| M | 1990904 | cellular_component | ribonucleoprotein complex |
| N | 0003723 | molecular_function | RNA binding |
| N | 0003735 | molecular_function | structural constituent of ribosome |
| N | 0005840 | cellular_component | ribosome |
| N | 0006412 | biological_process | translation |
| N | 0015935 | cellular_component | small ribosomal subunit |
| N | 0019843 | molecular_function | rRNA binding |
| N | 1990904 | cellular_component | ribonucleoprotein complex |
| O | 0003676 | molecular_function | nucleic acid binding |
| O | 0003723 | molecular_function | RNA binding |
| O | 0003735 | molecular_function | structural constituent of ribosome |
| O | 0005829 | cellular_component | cytosol |
| O | 0005840 | cellular_component | ribosome |
| O | 0006412 | biological_process | translation |
| O | 0015935 | cellular_component | small ribosomal subunit |
| O | 0019843 | molecular_function | rRNA binding |
| O | 1990904 | cellular_component | ribonucleoprotein complex |
| P | 0002181 | biological_process | cytoplasmic translation |
| P | 0003723 | molecular_function | RNA binding |
| P | 0003735 | molecular_function | structural constituent of ribosome |
| P | 0005840 | cellular_component | ribosome |
| P | 0006412 | biological_process | translation |
| P | 0008270 | molecular_function | zinc ion binding |
| P | 0015935 | cellular_component | small ribosomal subunit |
| P | 0019843 | molecular_function | rRNA binding |
| P | 0022627 | cellular_component | cytosolic small ribosomal subunit |
| P | 0046872 | molecular_function | metal ion binding |
| P | 1990904 | cellular_component | ribonucleoprotein complex |
| Q | 0003735 | molecular_function | structural constituent of ribosome |
| Q | 0005840 | cellular_component | ribosome |
| Q | 0006412 | biological_process | translation |
| Q | 0022627 | cellular_component | cytosolic small ribosomal subunit |
| Q | 0070181 | molecular_function | small ribosomal subunit rRNA binding |
| Q | 1990904 | cellular_component | ribonucleoprotein complex |
| R | 0003723 | molecular_function | RNA binding |
| R | 0003735 | molecular_function | structural constituent of ribosome |
| R | 0005840 | cellular_component | ribosome |
| R | 0006412 | biological_process | translation |
| R | 0019843 | molecular_function | rRNA binding |
| R | 0022627 | cellular_component | cytosolic small ribosomal subunit |
| R | 1990904 | cellular_component | ribonucleoprotein complex |
| S | 0003735 | molecular_function | structural constituent of ribosome |
| S | 0005829 | cellular_component | cytosol |
| S | 0005840 | cellular_component | ribosome |
| S | 0006412 | biological_process | translation |
| S | 1990904 | cellular_component | ribonucleoprotein complex |
| T | 0000028 | biological_process | ribosomal small subunit assembly |
| T | 0003723 | molecular_function | RNA binding |
| T | 0003735 | molecular_function | structural constituent of ribosome |
| T | 0005840 | cellular_component | ribosome |
| T | 0006412 | biological_process | translation |
| T | 0015935 | cellular_component | small ribosomal subunit |
| T | 0019843 | molecular_function | rRNA binding |
| T | 0022627 | cellular_component | cytosolic small ribosomal subunit |
| T | 1990904 | cellular_component | ribonucleoprotein complex |
| U | 0000028 | biological_process | ribosomal small subunit assembly |
| U | 0003723 | molecular_function | RNA binding |
| U | 0003735 | molecular_function | structural constituent of ribosome |
| U | 0005840 | cellular_component | ribosome |
| U | 0006412 | biological_process | translation |
| U | 0022627 | cellular_component | cytosolic small ribosomal subunit |
| U | 1990904 | cellular_component | ribonucleoprotein complex |
| V | 0003735 | molecular_function | structural constituent of ribosome |
| V | 0005840 | cellular_component | ribosome |
| V | 0006412 | biological_process | translation |
| V | 1990904 | cellular_component | ribonucleoprotein complex |
| W | 0003735 | molecular_function | structural constituent of ribosome |
| W | 0005840 | cellular_component | ribosome |
| W | 0006412 | biological_process | translation |
| W | 0008270 | molecular_function | zinc ion binding |
| W | 0046872 | molecular_function | metal ion binding |
| W | 1990904 | cellular_component | ribonucleoprotein complex |
| X | 0000028 | biological_process | ribosomal small subunit assembly |
| X | 0003735 | molecular_function | structural constituent of ribosome |
| X | 0005840 | cellular_component | ribosome |
| X | 0006412 | biological_process | translation |
| X | 0022627 | cellular_component | cytosolic small ribosomal subunit |
| X | 0030490 | biological_process | maturation of SSU-rRNA |
| X | 1990904 | cellular_component | ribonucleoprotein complex |
| Y | 0003735 | molecular_function | structural constituent of ribosome |
| Y | 0005840 | cellular_component | ribosome |
| Y | 0006412 | biological_process | translation |
| Y | 0008270 | molecular_function | zinc ion binding |
| Y | 0046872 | molecular_function | metal ion binding |
| Y | 1990904 | cellular_component | ribonucleoprotein complex |
| Z | 0003676 | molecular_function | nucleic acid binding |
| Z | 0003723 | molecular_function | RNA binding |
| Z | 0003735 | molecular_function | structural constituent of ribosome |
| Z | 0005840 | cellular_component | ribosome |
| Z | 0006412 | biological_process | translation |
| Z | 0015935 | cellular_component | small ribosomal subunit |
| Z | 0019843 | molecular_function | rRNA binding |
| Z | 0022627 | cellular_component | cytosolic small ribosomal subunit |
| Z | 1990904 | cellular_component | ribonucleoprotein complex |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 1 |
| Details | binding site for residue MG 2 1601 |
| Chain | Residue |
| 2 | G28 |
| site_id | AC2 |
| Number of Residues | 3 |
| Details | binding site for residue MG 2 1602 |
| Chain | Residue |
| 2 | A538 |
| 2 | A539 |
| 2 | A540 |
| site_id | AC3 |
| Number of Residues | 1 |
| Details | binding site for residue MG 2 1603 |
| Chain | Residue |
| 2 | C39 |
| site_id | AC4 |
| Number of Residues | 1 |
| Details | binding site for residue MG 2 1604 |
| Chain | Residue |
| 2 | A1370 |
| site_id | AC5 |
| Number of Residues | 1 |
| Details | binding site for residue MG 2 1605 |
| Chain | Residue |
| 2 | A574 |
| site_id | AC6 |
| Number of Residues | 1 |
| Details | binding site for residue MG 2 1606 |
| Chain | Residue |
| 2 | A587 |
| site_id | AC7 |
| Number of Residues | 1 |
| Details | binding site for residue MG 2 1607 |
| Chain | Residue |
| 2 | G591 |
| site_id | AC8 |
| Number of Residues | 2 |
| Details | binding site for residue MG 2 1608 |
| Chain | Residue |
| 2 | A726 |
| 2 | G727 |
| site_id | AC9 |
| Number of Residues | 4 |
| Details | binding site for residue MG 2 1609 |
| Chain | Residue |
| 2 | 6MZ1469 |
| 2 | G1474 |
| 2 | A1476 |
| 2 | G1477 |
| site_id | AD1 |
| Number of Residues | 1 |
| Details | binding site for residue MG 2 1610 |
| Chain | Residue |
| 2 | C106 |
| site_id | AD2 |
| Number of Residues | 1 |
| Details | binding site for residue MG 2 1611 |
| Chain | Residue |
| 2 | A148 |
| site_id | AD3 |
| Number of Residues | 2 |
| Details | binding site for residue MG 2 1612 |
| Chain | Residue |
| 2 | C584 |
| 2 | C586 |
| site_id | AD4 |
| Number of Residues | 4 |
| Details | binding site for residue MG 2 1616 |
| Chain | Residue |
| 2 | UR31467 |
| 2 | A1468 |
| 2 | 6MZ1469 |
| 2 | G1474 |
| site_id | AD5 |
| Number of Residues | 2 |
| Details | binding site for residue MG 2 1619 |
| Chain | Residue |
| 2 | A474 |
| 2 | A475 |
| site_id | AD6 |
| Number of Residues | 2 |
| Details | binding site for residue MG 2 1620 |
| Chain | Residue |
| 2 | G554 |
| 2 | G555 |
| site_id | AD7 |
| Number of Residues | 3 |
| Details | binding site for residue MG 2 1621 |
| Chain | Residue |
| 2 | A112 |
| 2 | G113 |
| 2 | C298 |
| site_id | AD8 |
| Number of Residues | 3 |
| Details | binding site for residue MG 2 1625 |
| Chain | Residue |
| 2 | C1019 |
| 2 | G1171 |
| 2 | G1172 |
| site_id | AD9 |
| Number of Residues | 4 |
| Details | binding site for residue MG 2 1626 |
| Chain | Residue |
| 2 | C951 |
| 2 | C952 |
| 2 | U953 |
| 2 | G1196 |
| site_id | AE1 |
| Number of Residues | 2 |
| Details | binding site for residue MG 2 1627 |
| Chain | Residue |
| 2 | C1019 |
| 2 | G1171 |
| site_id | AE2 |
| Number of Residues | 1 |
| Details | binding site for residue MG 2 1628 |
| Chain | Residue |
| 2 | U1198 |
| site_id | AE3 |
| Number of Residues | 2 |
| Details | binding site for residue MG 2 1629 |
| Chain | Residue |
| 2 | C1277 |
| 2 | G1278 |
| site_id | AE4 |
| Number of Residues | 5 |
| Details | binding site for residue MG 2 1630 |
| Chain | Residue |
| 2 | A1293 |
| 2 | C1294 |
| 2 | U1295 |
| 2 | C1296 |
| 2 | G1297 |
| site_id | AE5 |
| Number of Residues | 4 |
| Details | binding site for residue ZN C 101 |
| Chain | Residue |
| C | CYS32 |
| C | CYS35 |
| C | CYS55 |
| C | CYS58 |
| site_id | AE6 |
| Number of Residues | 4 |
| Details | binding site for residue ZN C 102 |
| Chain | Residue |
| C | CYS14 |
| C | CYS17 |
| C | CYS43 |
| C | CYS46 |
| site_id | AE7 |
| Number of Residues | 4 |
| Details | binding site for residue ZN F 301 |
| Chain | Residue |
| F | CYS128 |
| F | CYS133 |
| F | CYS135 |
| F | HIS139 |
| site_id | AE8 |
| Number of Residues | 4 |
| Details | binding site for residue ZN P 101 |
| Chain | Residue |
| P | CYS21 |
| P | CYS24 |
| P | CYS39 |
| P | CYS42 |
| site_id | AE9 |
| Number of Residues | 4 |
| Details | binding site for residue ZN R 201 |
| Chain | Residue |
| R | CYS16 |
| R | CYS21 |
| R | HIS24 |
| R | CYS77 |
| site_id | AF1 |
| Number of Residues | 4 |
| Details | binding site for residue ZN W 101 |
| Chain | Residue |
| W | CYS20 |
| W | CYS23 |
| W | CYS39 |
| W | CYS42 |
| site_id | AF2 |
| Number of Residues | 2 |
| Details | binding site for residue MG 5 902 |
| Chain | Residue |
| 5 | U816 |
| 5 | A817 |
| site_id | AF3 |
| Number of Residues | 6 |
| Details | binding site for residue MET 4 101 |
| Chain | Residue |
| 4 | A76 |
| 7 | TYR51 |
| 7 | ARG280 |
| 7 | GLY282 |
| 7 | LEU294 |
| 7 | ALA296 |
| site_id | AF4 |
| Number of Residues | 1 |
| Details | binding site for residue MG 4 102 |
| Chain | Residue |
| 4 | A37 |
| site_id | AF5 |
| Number of Residues | 15 |
| Details | binding site for residue GNP 7 501 |
| Chain | Residue |
| 7 | HIS17 |
| 7 | ASP19 |
| 7 | HIS20 |
| 7 | GLY21 |
| 7 | LYS22 |
| 7 | THR23 |
| 7 | THR24 |
| 7 | MET45 |
| 7 | THR46 |
| 7 | ASN149 |
| 7 | LYS150 |
| 7 | SER184 |
| 7 | ALA185 |
| 7 | LEU186 |
| 7 | MG502 |
| site_id | AF6 |
| Number of Residues | 3 |
| Details | binding site for residue MG 7 502 |
| Chain | Residue |
| 7 | THR23 |
| 7 | THR46 |
| 7 | GNP501 |
| site_id | AF7 |
| Number of Residues | 2 |
| Details | binding site for residues B8H 2 938 and 5MC 2 939 |
| Chain | Residue |
| 2 | A940 |
| 2 | U937 |
| site_id | AF8 |
| Number of Residues | 9 |
| Details | binding site for residues MA6 2 1487 and MA6 2 1488 |
| Chain | Residue |
| 0 | ARG22 |
| 2 | 5HM1378 |
| 2 | G1379 |
| 2 | U1380 |
| 2 | G1466 |
| 2 | UR31467 |
| 2 | G1485 |
| 2 | G1486 |
| 2 | C1489 |
| site_id | AF9 |
| Number of Residues | 6 |
| Details | binding site for residues 5MU 4 54 and PSU 4 55 |
| Chain | Residue |
| 4 | G18 |
| 4 | G53 |
| 4 | C56 |
| 4 | A57 |
| 4 | A58 |
| 4 | C61 |
Functional Information from PROSITE/UniProt
| site_id | PS00053 |
| Number of Residues | 18 |
| Details | RIBOSOMAL_S8 Ribosomal protein S8 signature. GilIVSTSqGVMshkeAR |
| Chain | Residue | Details |
| I | GLY100-ARG117 |
| site_id | PS00054 |
| Number of Residues | 23 |
| Details | RIBOSOMAL_S11 Ribosomal protein S11 signature. IrALarA.GLkIgrveDvTPiPHD |
| Chain | Residue | Details |
| M | ILE102-ASP124 |
| site_id | PS00056 |
| Number of Residues | 13 |
| Details | RIBOSOMAL_S17 Ribosomal protein S17 signature. GDrVlIaEtRPLS |
| Chain | Residue | Details |
| R | GLY83-SER95 |
| site_id | PS00323 |
| Number of Residues | 25 |
| Details | RIBOSOMAL_S19 Ribosomal protein S19 signature. NGKefvpveIkpemIGhyLGEFapT |
| Chain | Residue | Details |
| T | ASN85-THR109 |
| site_id | PS00360 |
| Number of Residues | 19 |
| Details | RIBOSOMAL_S9 Ribosomal protein S9 signature. GGGfmGQaeAariAiARAL |
| Chain | Residue | Details |
| K | GLY68-LEU86 |
| site_id | PS00361 |
| Number of Residues | 16 |
| Details | RIBOSOMAL_S10 Ribosomal protein S10 signature. AertGVrmsGPIpLPT |
| Chain | Residue | Details |
| L | ALA27-THR42 |
| site_id | PS00362 |
| Number of Residues | 31 |
| Details | RIBOSOMAL_S15 Ribosomal protein S15 signature. LrkHLeqhPkDlhSmrgLqlIeskirrLvkY |
| Chain | Residue | Details |
| Q | LEU105-TYR135 |
| site_id | PS00527 |
| Number of Residues | 22 |
| Details | RIBOSOMAL_S14 Ribosomal protein S14 signature. R.Cgqygpiirihg.LMLCRhCFR |
| Chain | Residue | Details |
| P | ARG23-ARG44 |
| site_id | PS00528 |
| Number of Residues | 15 |
| Details | RIBOSOMAL_S4E Ribosomal protein S4e signature. HlKRLAaPtsWyIeR |
| Chain | Residue | Details |
| E | HIS9-ARG23 |
| site_id | PS00529 |
| Number of Residues | 23 |
| Details | RIBOSOMAL_S24E Ribosomal protein S24e signature. FGsyKSkGYAkYYYDkdrmlyiE |
| Chain | Residue | Details |
| V | PHE60-GLU82 |
| site_id | PS00578 |
| Number of Residues | 12 |
| Details | RIBOSOMAL_S6E Ribosomal protein S6e signature. IRGGtDkdGfPM |
| Chain | Residue | Details |
| G | ILE63-MET74 |
| site_id | PS00585 |
| Number of Residues | 33 |
| Details | RIBOSOMAL_S5 Ribosomal protein S5 signature. GRrvrFrVlaAVGNrd.GyVGlGighgr.EVgi.AI |
| Chain | Residue | Details |
| F | GLY78-ILE110 |
| site_id | PS00628 |
| Number of Residues | 20 |
| Details | RIBOSOMAL_S19E Ribosomal protein S19e signature. PerfykaGgsIiRkALQqLE |
| Chain | Residue | Details |
| U | PRO87-GLU106 |
| site_id | PS00632 |
| Number of Residues | 25 |
| Details | RIBOSOMAL_S4 Ribosomal protein S4 signature. LErRLqtiVYKkglArTmrqARqLI |
| Chain | Residue | Details |
| D | LEU101-ILE125 |
| site_id | PS00646 |
| Number of Residues | 14 |
| Details | RIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGiRHelGlpVRGQ |
| Chain | Residue | Details |
| O | ARG116-GLN129 |
| site_id | PS00712 |
| Number of Residues | 16 |
| Details | RIBOSOMAL_S17E Ribosomal protein S17e signature. VtSKkIRNrIAGYiTK |
| Chain | Residue | Details |
| S | VAL41-LYS56 |
| site_id | PS00961 |
| Number of Residues | 9 |
| Details | RIBOSOMAL_S28E Ribosomal protein S28e signature. ETEREAReI |
| Chain | Residue | Details |
| X | GLU59-ILE67 |
| site_id | PS00962 |
| Number of Residues | 12 |
| Details | RIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. LdQYLAAGVHIG |
| Chain | Residue | Details |
| B | LEU9-GLY20 |
| site_id | PS00963 |
| Number of Residues | 25 |
| Details | RIBOSOMAL_S2_2 Ribosomal protein S2 signature 2. PdvIIItDpraDhqaMkEaieiGIP |
| Chain | Residue | Details |
| B | PRO112-PRO136 |
| site_id | PS01082 |
| Number of Residues | 18 |
| Details | RIBOSOMAL_L7AE Ribosomal protein L7Ae signature. CeekeIPYiyVpSKkeLG |
| Chain | Residue | Details |
| 3 | CYS70-GLY87 |
| site_id | PS01168 |
| Number of Residues | 33 |
| Details | RIBOSOMAL_S27E Ribosomal protein S27e signature. KCidCgneqivFShPatrvrCnvCGatLvePtG |
| Chain | Residue | Details |
| W | LYS19-GLY51 |
| site_id | PS01191 |
| Number of Residues | 13 |
| Details | RIBOSOMAL_S3AE Ribosomal protein S3Ae signature. VlNRVvEvTLkDI |
| Chain | Residue | Details |
| A | VAL44-ILE56 |
| site_id | PS01193 |
| Number of Residues | 20 |
| Details | RIBOSOMAL_S8E Ribosomal protein S8e signature. RkpSGGrivla.RkKrKrELG |
| Chain | Residue | Details |
| J | ARG10-GLY29 |
| site_id | PS01262 |
| Number of Residues | 23 |
| Details | IF1A Eukaryotic initiation factor 1A signature. AlGaGWmdvrCeDGkiRrcRIpG |
| Chain | Residue | Details |
| 6 | ALA31-GLY53 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI2 |
| Number of Residues | 71 |
| Details | Domain: {"description":"S4 RNA-binding","evidences":[{"source":"HAMAP-Rule","id":"MF_01306","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 62 |
| Details | Domain: {"description":"S4 RNA-binding"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 63 |
| Details | Domain: {"description":"S5 DRBM","evidences":[{"source":"HAMAP-Rule","id":"MF_01307","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 48 |
| Details | Region: {"description":"Disordered","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 10 |
| Details | Compositional bias: {"description":"Basic and acidic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI7 |
| Number of Residues | 16 |
| Details | Compositional bias: {"description":"Basic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI8 |
| Number of Residues | 4 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01364","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI9 |
| Number of Residues | 22 |
| Details | Zinc finger: {"description":"C4-type","evidences":[{"source":"HAMAP-Rule","id":"MF_00371","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI10 |
| Number of Residues | 4 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00371","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI11 |
| Number of Residues | 21 |
| Details | Zinc finger: {"description":"C4-type","evidences":[{"source":"HAMAP-Rule","id":"MF_00777","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI12 |
| Number of Residues | 4 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00777","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI13 |
| Number of Residues | 69 |
| Details | Domain: {"description":"KH type-2","evidences":[{"source":"HAMAP-Rule","id":"MF_01309","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI14 |
| Number of Residues | 199 |
| Details | Domain: {"description":"tr-type G","evidences":[{"source":"HAMAP-Rule","id":"MF_00119","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI15 |
| Number of Residues | 7 |
| Details | Region: {"description":"G1","evidences":[{"source":"HAMAP-Rule","id":"MF_00119","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI16 |
| Number of Residues | 4 |
| Details | Region: {"description":"G2","evidences":[{"source":"HAMAP-Rule","id":"MF_00119","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI17 |
| Number of Residues | 3 |
| Details | Region: {"description":"G3","evidences":[{"source":"HAMAP-Rule","id":"MF_00119","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI18 |
| Number of Residues | 3 |
| Details | Region: {"description":"G4","evidences":[{"source":"HAMAP-Rule","id":"MF_00119","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI19 |
| Number of Residues | 2 |
| Details | Region: {"description":"G5","evidences":[{"source":"HAMAP-Rule","id":"MF_00119","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI20 |
| Number of Residues | 10 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00119","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"25690901","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4RCY","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4RD1","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI21 |
| Number of Residues | 2 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00119","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"25690901","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4RD1","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI22 |
| Number of Residues | 2 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00119","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"16407071","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"25690901","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2AHO","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI23 |
| Number of Residues | 4 |
| Details | Binding site: {"evidences":[{"source":"UniProtKB","id":"Q8U082","evidenceCode":"ECO:0000250"},{"source":"HAMAP-Rule","id":"MF_00119","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |






